CF835244
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.989e-34 Identity = 71/138 (51.45%), Postives = 102/138 (73.91%), Query Frame = -2 Query: 284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685 FK AF +F DGCI+TKELG VMR LGQNPT ELQ+MI+EVD DG+GT+DF EFL +M R MKD SEEEL + FR+FDK+ +G+I EL+ ++ GE +T+++++E++++ D + DG+I+Y+EF++ M Sbjct: 20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.989e-34 Identity = 71/138 (51.45%), Postives = 102/138 (73.91%), Query Frame = -2 Query: 284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685 FK AF +F DGCI+TKELG VMR LGQNPT ELQ+MI+EVD DG+GT+DF EFL +M R MKD SEEEL + FR+FDK+ +G+I EL+ ++ GE +T+++++E++++ D + DG+I+Y+EF++ M Sbjct: 20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.210e-34 Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = -2 Query: 284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682 +EAF LFD DG G I KEL MR+LG P + E++ MI+EVD +G G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS L+ V LGE LTDEE+ EMI EAD DGDG++N EEF+++M Sbjct: 34 REAFDLFDVDGSGTIDAKELKVAMRALGFEPRKEEMKKMISEVDREGTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFLRIM 166
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34 Identity = 70/138 (50.72%), Postives = 102/138 (73.91%), Query Frame = -2 Query: 284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685 FK AF +F DGCI+TKELG VMR LGQNPT ELQ+MI+EVD DG+GT+DF EFL +M R MKD +EEEL + FR+FDK+ +G+I EL+ ++ GE +T+++++E++++ D + DG+I+Y+EF++ M Sbjct: 20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34 Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = -2 Query: 284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682 +EAF LFD DG G I KEL MR+LG P + E++ MI+EVD + G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS L+ V LGE LTDEE+ EMI EAD DGDG++N EEF+K+M Sbjct: 34 REAFDLFDSDGSGTIDVKELKVAMRALGFEPRKEEMKKMISEVDKEATGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGESLTDEELQEMIDEADRDGDGEVNEEEFLKIM 166
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR_CHLRE (Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34 Identity = 69/133 (51.88%), Postives = 94/133 (70.68%), Query Frame = -2 Query: 284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682 +EAF LFD DG G I KEL MR+LG P + E++ MI+E+D DG+GTIDF EFL +M KM + DS EE+ +AFR+FD D +G I+ +LR V LGE LT+EE+ EMI EAD + D +I+ +EF+++M Sbjct: 31 REAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.516e-33 Identity = 68/80 (85.00%), Postives = 76/80 (95.00%), Query Frame = -2 Query: 275 LNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514 L +MARKMK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K Sbjct: 1 LTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 80
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.411e-33 Identity = 66/133 (49.62%), Postives = 95/133 (71.43%), Query Frame = -2 Query: 284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682 +EAF LFD DG G I KEL MR+LG P + E++ MI+E+D +G G ++F +FL +M +KM + D++EE+ +AF++FD D+ G IS L+ V LGE LTDEE+ EMI EAD DGDG++N +EF+++M Sbjct: 34 REAFDLFDADGTGTIDIKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLRIM 166
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR_DUNSA (Caltractin OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.411e-33 Identity = 69/133 (51.88%), Postives = 91/133 (68.42%), Query Frame = -2 Query: 284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682 +EAF LFD DG G I KEL MR+LG P + E++ MI ++D G+GTIDF EFL +M KM + DS EE+ +AF++FD D GFI+ L+ V LGE LTDEE+ EM EAD +GDGQI+ +EF ++M Sbjct: 31 REAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKAGSGTIDFEEFLQMMTSKMGERDSREEIIKAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIM 163
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_COTJA (Troponin C, slow skeletal and cardiac muscles OS=Coturnix coturnix japonica GN=TNNC1 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 5.761e-33 Identity = 68/138 (49.28%), Postives = 102/138 (73.91%), Query Frame = -2 Query: 284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685 FK AF +F DGCI+TKELG VMR LGQNPT ELQ+MI+EVD DG+GT+DF +FL +M R MKD +EEEL + FR+FDK+ +G+I EL+ ++ GE +T+++++E++++ + + DG+I+Y+EF++ M Sbjct: 20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDQFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGNKNNDGRIDYDEFLQFM 157 The following BLAST results are available for this feature:
BLAST of CF835244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 471
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835244 ID=CF835244; Name=CF835244; organism=Citrus sinensis; type=EST; length=686bpback to top |