CF835244

Overview
NameCF835244
Unique NameCF835244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.989e-34
Identity = 71/138 (51.45%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.989e-34
Identity = 71/138 (51.45%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.210e-34
Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+EVD +G G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+++M
Sbjct:   34 REAFDLFDVDGSGTIDAKELKVAMRALGFEPRKEEMKKMISEVDREGTGKISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFLRIM 166          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34
Identity = 70/138 (50.72%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     +EEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+EVD +  G I F +FL +M +KM + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+K+M
Sbjct:   34 REAFDLFDSDGSGTIDVKELKVAMRALGFEPRKEEMKKMISEVDKEATGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGESLTDEELQEMIDEADRDGDGEVNEEEFLKIM 166          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR_CHLRE (Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34
Identity = 69/133 (51.88%), Postives = 94/133 (70.68%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+E+D DG+GTIDF EFL +M  KM + DS EE+ +AFR+FD D +G I+  +LR V   LGE LT+EE+ EMI EAD + D +I+ +EF+++M
Sbjct:   31 REAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.516e-33
Identity = 68/80 (85.00%), Postives = 76/80 (95.00%), Query Frame = -2
Query:  275 LNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            L +MARKMK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    1 LTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 80          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.411e-33
Identity = 66/133 (49.62%), Postives = 95/133 (71.43%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            +EAF LFD DG G I  KEL   MR+LG  P + E++ MI+E+D +G G ++F +FL +M +KM + D++EE+ +AF++FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   34 REAFDLFDADGTGTIDIKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLRIM 166          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR_DUNSA (Caltractin OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.411e-33
Identity = 69/133 (51.88%), Postives = 91/133 (68.42%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            +EAF LFD DG G I  KEL   MR+LG  P + E++ MI ++D  G+GTIDF EFL +M  KM + DS EE+ +AF++FD D  GFI+   L+ V   LGE LTDEE+ EM  EAD +GDGQI+ +EF ++M
Sbjct:   31 REAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKAGSGTIDFEEFLQMMTSKMGERDSREEIIKAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIM 163          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_COTJA (Troponin C, slow skeletal and cardiac muscles OS=Coturnix coturnix japonica GN=TNNC1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.761e-33
Identity = 68/138 (49.28%), Postives = 102/138 (73.91%), Query Frame = -2
Query:  284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +F     DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF +FL +M R MKD     +EEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ + + DG+I+Y+EF++ M
Sbjct:   20 FKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDQFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGNKNNDGRIDYDEFLQFM 157          
The following BLAST results are available for this feature:
BLAST of CF835244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
TNNC1_RABIT3.989e-3451.45Troponin C, slow skeletal and cardiac muscles OS=O... [more]
TNNC1_HUMAN3.989e-3451.45Troponin C, slow skeletal and cardiac muscles OS=H... [more]
CETN1_HUMAN5.210e-3452.63Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1[more]
TNNC1_CHICK6.805e-3450.72Troponin C, slow skeletal and cardiac muscles OS=G... [more]
CETN1_MOUSE8.887e-3452.63Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1[more]
CATR_CHLRE8.887e-3451.88Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1[more]
CALM_STRPU1.516e-3385.00Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
CETN2_MOUSE4.411e-3349.62Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1[more]
CATR_DUNSA4.411e-3351.88Caltractin OS=Dunaliella salina PE=2 SV=1[more]
TNNC1_COTJA5.761e-3349.28Troponin C, slow skeletal and cardiac muscles OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835244 ID=CF835244; Name=CF835244; organism=Citrus sinensis; type=EST; length=686bp
TTTTTTTTTTTTTTTTTAGAAATAGGGCAGATCAACGAGTCACTCTTTTA
ACAGAAACAATGTTCACAGAAGAGCGGAAAAAAACTAAAACATTAAAAAA
CTGAAAAGTTGCTCCAGTCACAAGACAAATTGAAGCAGGAGACAACATGC
TTCCTTTAGCTTGACCTCAGAGTTATCAAATTAAAATTTATAAAAAAGGA
AACTAGGGAACCAATTATATTAATCAACCAATTTCTTCTTTTCCCAGGAA
GTTTTGGTTGGGTGGAGTCACTTACTTAGCCATCATAACCTTGACAAATT
CCTCGTAATTTATCTGGCCATCACCATCGACATCAGCTTCCCTTATCATC
TCATCGACTTCCTCATCAGTAAGCTTCTCCCCTAGGTTTGTCATCACATG
GCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCC
GGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCCTG
GCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCCATTACCATCAGC
ATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAGTGGGGTTCTGAC
CCAGTGACCTCATAACAGTGCCAAGCTCCTTGGTGGTAATGCAACCGTCG
CCGTCCTTGTCGAACAAGCTGAAGGCTTCTTTGAAC
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