CF835244

Overview
NameCF835244
Unique NameCF835244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CML13_ORYSJ (Probable calcium-binding protein CML13 OS=Oryza sativa subsp. japonica GN=CML13 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.420e-31
Identity = 62/133 (46.62%), Postives = 94/133 (70.68%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            KEAF LFD D  G I  KEL   MR+LG   TE ++  MI +VD DG+G+ID+ EF ++M  K+ + DS+EEL +AF + D+D+NG IS  +++ +   LGE  T +E+ EM++EAD +GDG+I+++EF+++M
Sbjct:   30 KEAFDLFDTDNSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGSIDYEEFEHMMTAKIGERDSKEELTKAFSIIDQDKNGKISDVDIQRIAKELGENFTYQEIQEMVQEADRNGDGEIDFDEFIRMM 162          

HSP 2 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  275 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 472
            +E+KEAF +FD D +G I A EL   M  LG ++T+E++++MI + D DG G I+YEEF  +M AK
Sbjct:   27 QEIKEAFDLFDTDNSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGSIDYEEFEHMMTAK 92          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR_NAEGR (Caltractin OS=Naegleria gruberi GN=CTN PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.420e-31
Identity = 68/133 (51.13%), Postives = 93/133 (69.92%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            KEAF LFD DG G I  KEL   MR+LG  P + E++ MI+ +D +G+G IDF +FL LM  KM + DS  E+ +AFR+FD+D +GFI+ A L+ V  +LGE +TDEE+ EMI EAD    GQI+ E+F+++M
Sbjct:   35 KEAFDLFDMDGSGKIDAKELKVAMRALGFEPKKEEIKKMISGID-NGSGKIDFNDFLQLMTAKMSEKDSHAEIMKAFRLFDEDDSGFITFANLKRVAKDLGENMTDEELREMIEEADRSNQGQISKEDFLRIM 166          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC_TACTR (Troponin C OS=Tachypleus tridentatus PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30
Identity = 61/136 (44.85%), Postives = 99/136 (72.79%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            ++AF +FD+D  G I T  + T++R+LGQ   E +L+D+I E+D DG+G ++F EF+ L AR + + D+E   EEL+EAFR++DK   GFI+ ++LR ++  L +KLT++E+DEMI E D DG G ++++EF+++M
Sbjct:   16 RKAFDMFDRDKKGVIHTNMVSTILRTLGQTFEEKDLKDLIAEIDQDGSGELEFEEFMALAARFLVEEDAEAMQEELREAFRLYDKQGQGFINVSDLRDILRALDDKLTEDELDEMIAEIDTDGSGTVDFDEFMEMM 151          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CALL5_HUMAN (Calmodulin-like protein 5 OS=Homo sapiens GN=CALML5 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.786e-30
Identity = 66/134 (49.25%), Postives = 95/134 (70.90%), Query Frame = -2
Query:  284 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            +K+AFS  D DG+G I  +ELG  +++ G+N +EA+L+ +I+EVD+DG+G I F EFL   A+K +     E+L+ AFR FD+D +G I+  ELR  M  LG+ L  EE+D MIREADVD DG++NYEEF +++
Sbjct:   13 YKKAFSAVDTDGNGTINAQELGAALKATGKNLSEAQLRKLISEVDSDGDGEISFQEFLTA-AKKARA--GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 143          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC_BRALA (Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.328e-29
Identity = 67/138 (48.55%), Postives = 98/138 (71.01%), Query Frame = -2
Query:  284 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            FK AF +FD+DG G I+TKELGT+M+ LG + +  ELQ MI+EVD D +GTIDF EFL +MAR M+D++ E   +EL+ AFRV DK+ +GFI   E R + +   G+ LTD+E+ E + + D + DG+ +YEE+ +++
Sbjct:   19 FKMAFDMFDEDGGGDISTKELGTIMKRLGMSISREELQQMIDEVDEDASGTIDFEEFLEMMARAMQDSEREIPDDELRAAFRVLDKNGDGFIDKDEFRALASECAGDDLTDDELLEFMMDYDGNRDGRFDYEEWKEII 156          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CML11_ORYSJ (Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica GN=CML11 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 62/138 (44.93%), Postives = 94/138 (68.12%), Query Frame = -2
Query:  278 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM---KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 682
            +E F  FD++GDG +T  ELG+++RSLG  P+  EL  +I   D + NG I+F EF+ L+A ++   +   SE++++  F +FD+D NGFI+AAEL H M  LG  LT +E+  MI+EAD DGDG+I+++EF + + A
Sbjct:   66 REIFRSFDRNGDGSLTQLELGSLLRSLGLKPSTDELDSLIQRADTNSNGLIEFSEFVALVAPELLYDRAPYSEDQIRRLFNIFDRDGNGFITAAELAHSMAKLGHALTVKELTGMIKEADTDGDGRISFQEFSRAITA 203          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC2_CAEEL (Troponin C, isoform 2 OS=Caenorhabditis elegans GN=tnc-2 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 57/138 (41.30%), Postives = 96/138 (69.57%), Query Frame = -2
Query:  284 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL----NLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            F++ F++FDK+G G I   ++G ++R++GQ   E +L+ +I E DADG+G I+F EF     N +     D   EEEL+EAFR++DK+ NG+I+ ++LR ++  L + +++EE+DEMI E D DG G ++++EF+++M
Sbjct:   20 FRKYFNMFDKEGKGYIRATQVGQILRTMGQAFEERDLKQLIKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMM 157          

HSP 2 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = -2
Query:  500 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA 682
            +EAF L+DK+G+G I   +L  ++R+L  N +E EL +MI E+DADG+GT+DF EF+ +M+
Sbjct:   98 REAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMMS 158          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CML19_ARATH (Calcium-binding protein CML19 OS=Arabidopsis thaliana GN=CML19 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 59/133 (44.36%), Postives = 86/133 (64.66%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            +E F LFD DG G I   EL   MRSLG      ++ +++ EVD + +G IDF EF+++M  K  + DS +EL +AF++ D D NG IS  +++ +   LGE  TD +++EMI EAD D DG++N EEF+K+M
Sbjct:   29 REIFDLFDIDGSGSIDASELNVAMRSLGFEMNNQQINELMAEVDKNQSGAIDFDEFVHMMTTKFGERDSIDELSKAFKIIDHDNNGKISPRDIKMIAKELGENFTDNDIEEMIEEADRDKDGEVNLEEFMKMM 161          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC_HALRO (Troponin C, body wall muscle OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 69/142 (48.59%), Postives = 93/142 (65.49%), Query Frame = -2
Query:  284 FKEAFSLFDKDG-DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD-------SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 685
            F+ AF +F  D  DG I++KELG VM+ LGQNPTE +LQ+MI EVD DG+GTIDF EF  +M R+M+  +        E+EL EAFR+FD D +G     EL+  +   GE +   EVDEM+ + D + D QI+YEE+V +M
Sbjct:   12 FRAAFDIFVADAKDGTISSKELGKVMKMLGQNPTEKDLQEMIEEVDIDGSGTIDFEEFCLMMYRQMQAQEEAKIPEREEKELSEAFRLFDLDGDGI--GDELKAALDGTGENVETWEVDEMMADGDKNHDSQIDYEEWVTMM 151          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR6_PARTE (Caltractin ICL1f OS=Paramecium tetraurelia GN=Icl1f PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -2
Query:  275 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 682
            KEAF LFD DG   I  KEL   M SLG       +  MI+++D DG+G IDF EFL LM  ++ + DS+ ++++ F +FD ++ GFI+  +LR V   LGE + D E+ EMI  AD DGD Q+ +E+F  +M  K
Sbjct:   45 KEAFDLFDTDGTQSIDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGFITLKDLRKVAKELGETMDDSELQEMIDRADSDGDTQVTFEDFYNIMTKK 180          
The following BLAST results are available for this feature:
BLAST of CF835244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
CML13_ORYSJ2.420e-3146.62Probable calcium-binding protein CML13 OS=Oryza sa... [more]
CATR_NAEGR2.420e-3151.13Caltractin OS=Naegleria gruberi GN=CTN PE=2 SV=1[more]
TNNC_TACTR2.676e-3044.85Troponin C OS=Tachypleus tridentatus PE=1 SV=1[more]
CALL5_HUMAN7.786e-3049.25Calmodulin-like protein 5 OS=Homo sapiens GN=CALML... [more]
TNNC_BRALA1.328e-2948.55Troponin C OS=Branchiostoma lanceolatum PE=1 SV=1[more]
CML11_ORYSJ5.047e-2944.93Probable calcium-binding protein CML11 OS=Oryza sa... [more]
TNNC2_CAEEL1.468e-2841.30Troponin C, isoform 2 OS=Caenorhabditis elegans GN... [more]
CML19_ARATH1.918e-2844.36Calcium-binding protein CML19 OS=Arabidopsis thali... [more]
TNNC_HALRO9.517e-2848.59Troponin C, body wall muscle OS=Halocynthia roretz... [more]
CATR6_PARTE1.243e-2744.12Caltractin ICL1f OS=Paramecium tetraurelia GN=Icl1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835244 ID=CF835244; Name=CF835244; organism=Citrus sinensis; type=EST; length=686bp
TTTTTTTTTTTTTTTTTAGAAATAGGGCAGATCAACGAGTCACTCTTTTA
ACAGAAACAATGTTCACAGAAGAGCGGAAAAAAACTAAAACATTAAAAAA
CTGAAAAGTTGCTCCAGTCACAAGACAAATTGAAGCAGGAGACAACATGC
TTCCTTTAGCTTGACCTCAGAGTTATCAAATTAAAATTTATAAAAAAGGA
AACTAGGGAACCAATTATATTAATCAACCAATTTCTTCTTTTCCCAGGAA
GTTTTGGTTGGGTGGAGTCACTTACTTAGCCATCATAACCTTGACAAATT
CCTCGTAATTTATCTGGCCATCACCATCGACATCAGCTTCCCTTATCATC
TCATCGACTTCCTCATCAGTAAGCTTCTCCCCTAGGTTTGTCATCACATG
GCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCC
GGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCCTG
GCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCCATTACCATCAGC
ATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAGTGGGGTTCTGAC
CCAGTGACCTCATAACAGTGCCAAGCTCCTTGGTGGTAATGCAACCGTCG
CCGTCCTTGTCGAACAAGCTGAAGGCTTCTTTGAAC
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