CF835244

Overview
NameCF835244
Unique NameCF835244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CAM2_SCHPO (Myosin 1 light chain cam2 OS=Schizosaccharomyces pombe GN=cam2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 64/136 (47.06%), Postives = 91/136 (66.91%), Query Frame = -2
Query:  275 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 682
            KEAF L+D D DG I T  +G+V+RSLG N T+AEL  + NE+       ID  +F++ ++ K+++T+SEEE  +AFRVFDKD +G+I  A+    M  LGEKL+D EV  M++EAD    G  +Y +FV+ +MAK
Sbjct:   12 KEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GDAIDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CML17_ARATH (Probable calcium-binding protein CML17 OS=Arabidopsis thaliana GN=CML17 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.623e-27
Identity = 62/139 (44.60%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM----KDTD--SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            +E F  FD++ DG +T  ELG+++R+LG  P+  + + +I++ D   NG ++FPEF+ L++ ++    K T   +EE+L   FR+FD D NGFI+AAEL H M  LG  LT  E+  MI+EAD DGDG+IN++EF K +
Sbjct:   18 REIFRSFDRNKDGSLTQLELGSLLRALGVKPSPDQFETLIDKADTKSNGLVEFPEFVALVSPELLSPAKRTTPYTEEQLLRLFRIFDTDGNGFITAAELAHSMAKLGHALTVAELTGMIKEADSDGDGRINFQEFAKAI 156          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: TNNC1_DROME (Troponin C, isoform 1 OS=Drosophila melanogaster GN=TpnC41C PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27
Identity = 60/136 (44.12%), Postives = 92/136 (67.65%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            + AF+ FD + +G I T  +GT++  LG    +A L D+I EVD DG+G I+F EF  L AR + + D+E    ELKEAFR++DK+ NG+I+   LR ++  L +KLT++++D MI E D DG G ++++EF++VM
Sbjct:   14 RNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLADIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEGNGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVM 149          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CML9_ORYSJ (Probable calcium-binding protein CML9 OS=Oryza sativa subsp. japonica GN=CML9 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = -2
Query:  281 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG-----TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 682
            +E F LFD D DG I   EL T +RSLGQN  EAE +  + +  A G G      IDF  FL++ ARKM+   +E+EL     VFD  ++G I A +LR  M + G++LT+EE DEM+R+AD  G+G++ Y+EFVKV+M
Sbjct:   14 REIFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFLADATASGGGGGGGGDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.617e-27
Identity = 60/134 (44.78%), Postives = 93/134 (69.40%), Query Frame = -2
Query:  284 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM-KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 682
            +E F  FD++ DG +T  ELG+++RSLG  P++ +L  +I + D + NG ++F EF+ L+   + K   ++++LK  FR+FD+D NG+I+AAEL H M  LG  LT EE+  MI+EAD DGDG I+++EFV+ +
Sbjct:   22 REIFRSFDQNKDGSLTELELGSLLRSLGLKPSQDQLDTLIQKADRNNNGLVEFSEFVALVEPDLVKCPYTDDQLKAIFRMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADRDGDGCIDFQEFVQAI 155          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR4_PARTE (Caltractin ICL1d OS=Paramecium tetraurelia GN=Icl1d PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  275 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 682
            KEAF LFD DG   I  KEL   M SLG       +  MI+++D DG+G IDF EFL LM  ++ + DS+ ++++ F +FD ++ G I+  +LR V   LGE + D E+ EMI  AD DGD Q+ +E+F  +M  K
Sbjct:   43 KEAFDLFDTDGTQSIDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVITLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMTKK 178          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR3_PARTE (Caltractin ICL1c OS=Paramecium tetraurelia GN=Icl1c PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  275 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 682
            KEAF LFD DG   I  KEL   M SLG       +  MI+++D DG+G IDF EFL LM  ++ + DS+ ++++ F +FD ++ G I+  +LR V   LGE + D E+ EMI  AD DGD Q+ +E+F  +M  K
Sbjct:   45 KEAFDLFDTDGTQSIDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVITLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMTKK 180          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR2_PARTE (Caltractin ICL1b OS=Paramecium tetraurelia GN=Icl1b PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  275 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 682
            KEAF LFD DG   I  KEL   M SLG       +  MI+++D DG+G IDF EFL LM  ++ + DS+ ++++ F +FD ++ G I+  +LR V   LGE + D E+ EMI  AD DGD Q+ +E+F  +M  K
Sbjct:   44 KEAFDLFDTDGTQSIDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVITLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMTKK 179          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CATR1_PARTE (Caltractin ICL1a OS=Paramecium tetraurelia GN=Icl1a PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.169e-27
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = -2
Query:  275 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 682
            KEAF LFD DG   I  KEL   M SLG       +  MI+++D DG+G IDF EFL LM  ++ + DS+ ++++ F +FD ++ G ++  +LR V   LGE + D E+ EMI  AD DGD Q+ +E+F  +M  K
Sbjct:   43 KEAFDLFDTDGTQSIDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVVTLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMTKK 178          
BLAST of CF835244 vs. ExPASy Swiss-Prot
Match: CALM4_MOUSE (Calmodulin-4 OS=Mus musculus GN=Calm4 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.057e-27
Identity = 60/133 (45.11%), Postives = 92/133 (69.17%), Query Frame = -2
Query:  287 FKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 685
            F+ AF+ FDK+ DG I+ +ELG VM+ LG+N  E +L+ +I+++D DG+G I F EFL  +  K K      EL+  F V D++ +G+I+  EL+  ++ LGE L+ EE+++MIR ADVD DG++ YEEFV++
Sbjct:   13 FQAAFNRFDKNKDGHISVEELGDVMKQLGKNLPEKDLKALISKLDTDGDGKISFEEFLTAI-EKYKKGHRAGELRAVFNVLDQNGDGYITVDELKESLSKLGESLSQEELEDMIRVADVDQDGKVKYEEFVRL 144          
The following BLAST results are available for this feature:
BLAST of CF835244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
CAM2_SCHPO1.243e-2747.06Myosin 1 light chain cam2 OS=Schizosaccharomyces p... [more]
CML17_ARATH1.623e-2744.60Probable calcium-binding protein CML17 OS=Arabidop... [more]
TNNC1_DROME2.120e-2744.12Troponin C, isoform 1 OS=Drosophila melanogaster G... [more]
CML9_ORYSJ2.120e-2746.76Probable calcium-binding protein CML9 OS=Oryza sat... [more]
CML18_ARATH3.617e-2744.78Probable calcium-binding protein CML18 OS=Arabidop... [more]
CATR4_PARTE4.723e-2743.38Caltractin ICL1d OS=Paramecium tetraurelia GN=Icl1... [more]
CATR3_PARTE4.723e-2743.38Caltractin ICL1c OS=Paramecium tetraurelia GN=Icl1... [more]
CATR2_PARTE4.723e-2743.38Caltractin ICL1b OS=Paramecium tetraurelia GN=Icl1... [more]
CATR1_PARTE6.169e-2742.65Caltractin ICL1a OS=Paramecium tetraurelia GN=Icl1... [more]
CALM4_MOUSE8.057e-2745.11Calmodulin-4 OS=Mus musculus GN=Calm4 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835244 ID=CF835244; Name=CF835244; organism=Citrus sinensis; type=EST; length=686bp
TTTTTTTTTTTTTTTTTAGAAATAGGGCAGATCAACGAGTCACTCTTTTA
ACAGAAACAATGTTCACAGAAGAGCGGAAAAAAACTAAAACATTAAAAAA
CTGAAAAGTTGCTCCAGTCACAAGACAAATTGAAGCAGGAGACAACATGC
TTCCTTTAGCTTGACCTCAGAGTTATCAAATTAAAATTTATAAAAAAGGA
AACTAGGGAACCAATTATATTAATCAACCAATTTCTTCTTTTCCCAGGAA
GTTTTGGTTGGGTGGAGTCACTTACTTAGCCATCATAACCTTGACAAATT
CCTCGTAATTTATCTGGCCATCACCATCGACATCAGCTTCCCTTATCATC
TCATCGACTTCCTCATCAGTAAGCTTCTCCCCTAGGTTTGTCATCACATG
GCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCC
GGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCCTG
GCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCCATTACCATCAGC
ATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAGTGGGGTTCTGAC
CCAGTGACCTCATAACAGTGCCAAGCTCCTTGGTGGTAATGCAACCGTCG
CCGTCCTTGTCGAACAAGCTGAAGGCTTCTTTGAAC
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