CF835257

Overview
NameCF835257
Unique NameCF835257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11430 contig Csv1_Contig11430:233..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835257 vs. ExPASy Swiss-Prot
Match: C519B_DICDI (Probable cytochrome P450 519B1 OS=Dictyostelium discoideum GN=cyp519b1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 47/162 (29.01%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  117 LINCILWLVFTLVWVMALSFVSRGRHKQL--PPGPRPYPVIGNLLELGAKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHVED 596
            LIN IL+  F L W++   F+ + R      PP P   P+IG+L +L   PH+SL +LAK++G + SL +G   TVV++  S  K +      +F +R  P++I  +      F          W+  RK+ +  + T  K+     L  K+ ++L+  + +
Sbjct:    3 LINLILY--FILFWIV-FDFIRKNRRISFNDPPSPWALPIIGHLHKLSLNPHRSLTELAKVYGGVYSLHIGDSKTVVITDVSAFKDVTIKQFKNFANRPQPKSIRVIT----NFKGLAFADYDQWQKTRKLVSSAL-TKTKIKTFNNLIEKQTENLIESMNE 156          
BLAST of CF835257 vs. ExPASy Swiss-Prot
Match: C81F1_ARATH (Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CYP81F1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 43/149 (28.86%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  150 LVWVMALSFV-SRGRHKQLPPGPRPYPVIGNLLELGAKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMA-KAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHV 590
            L  V++  F+ S+ +   LPPGP   P +G+L  +    H+ L + +  +GPI SLR G    VV++SPS+A ++    +D+    R  P  + +    ++  ++   P    W+NLR+I +  I +S +L   Q +R+ +I  +L  +
Sbjct:   10 LFLVISYKFLYSKTQRFNLPPGPPSRPFVGHLHLMKPPIHRLLQRYSNQYGPIFSLRFGSRRVVVITSPSLAQESFTGQNDIVLSSR--PLQLTAKYVAYNHTTVGTAPYGDHWRNLRRICSQEILSSHRLINFQHIRKDEILRMLTRL 156          
BLAST of CF835257 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  108 MDLLINCILWLVFTLVWVMALSFVS-RGRHKQLPPGPRPYPVIGNLLELGAK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQ 530
            MDLL+     L   L  + A++    RG+  +LPPGP P PV GN L++G    H++L  LAK    I+ LR+ Q   VV+SSP +AK +L    + F  R     ++   F      + +      W+ +R+I  +  FT++
Sbjct:    1 MDLLLLEKTLLALFLAAITAITISKLRGKPFKLPPGPFPVPVFGNWLQVGDDLNHRNLTDLAKRFAEILLLRMEQRNLVVISSPELAKEVLHTQGVEFGSR--TRNVVFDIFTGKGQDIVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of CF835257 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 46/166 (27.71%), Postives = 78/166 (46.99%), Query Frame = 3
Query:  114 LLINCILWLVFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHVEDNCRA 608
            LL+   L  +F    +       RG+  +LPPGP P P+ G  L++G    H++L   AK  G I  LR+GQ   VVVSSP +AK +L    + F  R     ++   F      + +      W+ +R+I  +  FT++ +   +     + + ++  V++N  A
Sbjct:    4 LLLEKTLLALFIAATIAVTISKLRGKRFKLPPGPIPVPIFGYWLQVGDDLNHRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQCVEFGSR--TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWESEAESVVNDVKNNAEA 167          
The following BLAST results are available for this feature:
BLAST of CF835257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
C519B_DICDI5.713e-1129.01Probable cytochrome P450 519B1 OS=Dictyostelium di... [more]
C81F1_ARATH7.461e-1128.86Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CY... [more]
TCMO_PEA9.744e-1132.17Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
TCMO_MEDSA9.744e-1127.71Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835257 ID=CF835257; Name=CF835257; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTGGGTATCCATAAGAAGCACATGTAAACCAATGCGTGAAAAAACC
TATGTATAGATACGGGGTTACAGTGTGCTAAACCAAAATATCAACTTCAA
TTCAAAGATGGATTTGTTAATTAACTGCATACTGTGGCTTGTATTCACAT
TGGTTTGGGTGATGGCTTTAAGTTTCGTTTCCAGAGGACGACACAAACAG
CTTCCACCGGGACCGAGGCCTTATCCAGTGATCGGAAACCTTCTGGAGCT
AGGTGCTAAACCTCACAAGTCACTGGCCAAGCTTGCCAAGATTCATGGGC
CCATAATGAGTCTAAGACTTGGCCAGGTGACCACAGTAGTGGTTTCTTCT
CCAAGCATGGCCAAAGCCATCCTTCAAAATCATGATTTATCATTCTGTGA
TCGAATGGTCCCTGAAGCAATCTTGTCACTGCCCTTCCCGCACCATGAAT
TCAGTTTGGCCTGGCTTCCAGTTTCAACAATGTGGAAAAATCTTCGAAAA
ATAAGCAACATGCATATTTTCACTAGTCAGAAACTCGATGCCAATCAAGA
GCTCCGGCGCAAGAAAATCAAAGACCTTCTTGCTCATGTTGAAGACAATT
GCCGTGCGGGTAAAGCAATAGATGTTGGCCAAGCTGCTTTCAATACTTCA
CTTAATTTAT
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