CF835258

Overview
NameCF835258
Unique NameCF835258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: C71AR_ARATH (Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=CYP71A27 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 42/156 (26.92%), Postives = 77/156 (49.36%), Query Frame = -2
Query:  225 IEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWD-NPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-----DNHNMDMEDKFGLTVQKAQPLHAVP 674
            + E ++ ++ YL  V+KE                  DV++ G+ +  G  V +N WA+ R+ + W  + + + PER       F+  + + +PFGAGRR+CPG+  ++ +  L L +L+  F+W+L      +   D+ +  G+ V +  PL   P
Sbjct:  339 VTEKEVEKMNYLHCVIKEGLRLHPSGPLLFRLPSE-DVQLKGYDISAGTHVIINAWALQRNPAIWGLDANEYRPERHFWYEFGFQRTDSKFVPFGAGRRLCPGIGFSLVLSKLALANLVKRFNWRLKVGPVGDDKPDLAEASGIDVCRKFPLIVFP 493          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2D1_RAT (Cytochrome P450 2D1 OS=Rattus norvegicus GN=Cyp2d1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E +D   +PY  AV+ E                  D+E+  F +PKG  + +N+ ++ +DE+ W+ PH F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  349 EMTDQAHMPYTNAVIHEVQRFGDIAPLNLPRFTSCDIEVQDFVIPKGTTLIINLSSVLKDETVWEKPHRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP17A_RANDY (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rana dybowskii GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 46/141 (32.62%), Postives = 70/141 (49.65%), Query Frame = -2
Query:  252 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHN--MDMEDKFGLTVQ 665
            SD   L Y +A + E                 K+  I  +T+PK A+V +N+W++  DE  W NPH F P+RFL  N +     +   +PFGAG R+C G  LA   + L L  ++  F  ++   +   D+E KFG+ +Q
Sbjct:  358 SDRKILHYTEAAISEVLRIRPVSPLLIPHVALKESSIGEYTIPKEARVVINLWSLHHDEKEWVNPHLFSPDRFLDENGNRVYSPSPSFLPFGAGIRVCLGEALAKMEVFLFLSWILQRFTLEVPEGDPLPDLEGKFGVVIQ 498          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP17A_ORYLA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oryzias latipes GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 48/147 (32.65%), Postives = 70/147 (47.62%), Query Frame = -2
Query:  252 PIEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL---GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNM--DMEDKFGLTVQ 677
            P + SD   LP+L+A ++E                  D  +  FTV KG +V +N+W++  DE  W NP  F P RFL   GS+      ++  +PFGAG R+C G  LA   L L L  ++  F   +        +E KFG+ +Q
Sbjct:  350 PPQLSDRGSLPFLEATIREVLRIRPVAPLLIPHVALSDTSLGDFTVRKGTRVVINLWSLHHDEKEWTNPDLFNPGRFLSADGSSLTLPSSSY--LPFGAGLRVCLGEALAKMELFLFLSWILQRFTLSVPPSQSLPSLEGKFGVVLQ 494          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2DJ_CALJA (Cytochrome P450 2D19 OS=Callithrix jacchus GN=CYP2D19 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 44/125 (35.20%), Postives = 63/125 (50.40%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E  D T +PY  AV+ E                 +D+E+ GF +PKG  +F N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  346 EMGDQTYMPYTTAVIHEVQRFADIVPLGVTHMTSRDIEVQGFLIPKGTTLFTNLSSVLKDEANWEKPFRFHPEHFLDAQGRFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 468          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP1A1_MOUSE (Cytochrome P450 1A1 OS=Mus musculus GN=Cyp1a1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 46/146 (31.51%), Postives = 70/146 (47.95%), Query Frame = -2
Query:  234 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIP-FGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKAQPLH 665
            SD  +LPYL+A + E                 +D  + GF +PKG  VFVN W +  D   W +P+ F PERFL  +     +  E +  FG G+R C G  +    + L L  L+   ++K+     +DM   +GLT++ A+  H
Sbjct:  364 SDRPQLPYLEAFILETFRHSSFVPFTIPHSTTRDTSLNGFYIPKGCCVFVNQWQVNHDRELWGDPNEFRPERFLTPSGTLDKRLSEKVTLFGLGKRKCIGETIGRSEVFLFLAILLQQIEFKVSPGEKVDMTPTYGLTLKHARCEH 509          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP17A_ICTPU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalurus punctatus GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 54/174 (31.03%), Postives = 77/174 (44.25%), Query Frame = -2
Query:  147 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMEDKFGLTVQKAQPLHAVPGAI*FYTIVRSQYIKRLVVATI*SAW 665
            +D   LPYL+A ++E                  D  I  +TV KG +V VN+W++  DE  W NP  F PERFL    +     +   +PFGAG R+C G  LA   L L L  ++                +F L V   QPL  + G   F  +++ Q  K  V+A + + W
Sbjct:  348 NDRGNLPYLEATIREVLRIRPVSPLLIPHVALSDANIGEYTVQKGTRVIVNLWSLHHDEKEWKNPELFNPERFLNEEGNSLCCPSLSYLPFGAGVRVCLGEALAKLELFLFLSWIL---------------QRFTLEVPGGQPLPELQGK--FRVVLQPQKYK--VIARLRTGW 502          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: C71AS_ARATH (Putative cytochrome P450 71A28 OS=Arabidopsis thaliana GN=CYP71A28 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 47/155 (30.32%), Postives = 75/155 (48.39%), Query Frame = -2
Query:  225 IEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHT--FIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMED---KFGLTVQKAQPLHAVP 674
            + E ++  + YL+AV+KE                 +DV             F+N WAI RD   W  P+   F PER L    +F+GQ+F  IPFG+GRR+CP +  A  ++ + L + +  F+W+++   +  +D   + G+ V    PL A P
Sbjct:  341 VPEEEVENMKYLKAVIKEVFRLHPPGPLSIPRQLSEDV-------------FINAWAIHRDTEKW-GPYAEEFKPERHLDLPLNFQGQDFNFIPFGSGRRLCPDIDFATMLIEVGLANFVYRFNWRVETRPLGDDDGLKQTGMEVCHKFPLIAFP 481          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2U1_RAT (Cytochrome P450 2U1 OS=Rattus norvegicus GN=Cyp2u1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 47/140 (33.57%), Postives = 68/140 (48.57%), Query Frame = -2
Query:  255 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTV 665
            +D  ++PY +A + E                 +   + G+++PKG  V  N+W+I RD   W+ P  F P RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ SF + L   +    M  +FGLT+
Sbjct:  381 TDKAQMPYTEATIMEVQRLSMVVPLAIPHMTSEKTVLQGYSIPKGTVVLPNLWSIHRDPVIWEKPDDFCPHRFLDDQGQLLKRETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQSFTFALPEGSEKPIMTGRFGLTL 518          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP1A1_RABIT (Cytochrome P450 1A1 OS=Oryctolagus cuniculus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 48/146 (32.88%), Postives = 71/146 (48.63%), Query Frame = -2
Query:  234 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKAQPLH 665
            SD  +LPYL+AV+ E                 +D  + GF +PKG  VFVN W    D   W +P  F PERFL  S A  K    +++ FG G+R C G  +    + L L +L+   ++ +     +DM   +GLT++ A+  H
Sbjct:  364 SDRPQLPYLEAVIMETFRHTSFLPFTIPHSTTRDTSLGGFYIPKGRCVFVNQWQNNHDPELWGDPEAFRPERFLTPSGAVDKALTEKVLLFGLGKRKCIGETIGRLEVFLFLATLLQQVEFSVSPGTTVDMTPIYGLTMKHARCEH 509          
The following BLAST results are available for this feature:
BLAST of CF835258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
C71AR_ARATH2.094e-1426.92Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=C... [more]
CP2D1_RAT2.735e-1432.26Cytochrome P450 2D1 OS=Rattus norvegicus GN=Cyp2d1... [more]
CP17A_RANDY2.735e-1432.62Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rana d... [more]
CP17A_ORYLA2.735e-1432.65Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oryzia... [more]
CP2DJ_CALJA3.572e-1435.20Cytochrome P450 2D19 OS=Callithrix jacchus GN=CYP2... [more]
CP1A1_MOUSE3.572e-1431.51Cytochrome P450 1A1 OS=Mus musculus GN=Cyp1a1 PE=1... [more]
CP17A_ICTPU3.572e-1431.03Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalu... [more]
C71AS_ARATH3.572e-1430.32Putative cytochrome P450 71A28 OS=Arabidopsis thal... [more]
CP2U1_RAT4.665e-1433.57Cytochrome P450 2U1 OS=Rattus norvegicus GN=Cyp2u1... [more]
CP1A1_RABIT6.093e-1432.88Cytochrome P450 1A1 OS=Oryctolagus cuniculus GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835258 ID=CF835258; Name=CF835258; organism=Citrus sinensis; type=EST; length=693bp
TTTTTTAATACAGTCAGATTTTAATGCTATTAAATCGCATGACTTTATAG
TTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAAAAAATA
AGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAACCACCAA
GCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCTACGAAC
TATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTTGAGCCT
TCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGGTTATCA
AGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATGTAACAT
TCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTCCGAAGG
GAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCTAAGAAC
CTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATCTCTGCC
AATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTGTGAAGC
CTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAGGGAGCT
GCAGGGTGCAATCTCAAAGTTTCTTTAACAACAGCTTGTAGATAAGGTAG
CCGAGTGATGTCAGATTCCTCAATTGGGTTACACTTGCAAACT
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