CF835258

Overview
NameCF835258
Unique NameCF835258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: C79B3_ARATH (Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana GN=CYP79B3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.093e-14
Identity = 39/127 (30.71%), Postives = 63/127 (49.61%), Query Frame = -2
Query:  300 IEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 674
            ++ESDI +L Y++A+++E                  D  +AG+ +PKG+QV ++ + +GR+   W +P +F PER L   S       +   I F  G+R C    L   +  +ML  L+  F WKL
Sbjct:  378 VQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKL 504          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2DS_MESAU (Cytochrome P450 2D28 OS=Mesocricetus auratus GN=CYP2D28A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 42/124 (33.87%), Postives = 61/124 (49.19%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E +D  R+PY  AV+ E                 +D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +   F  Q    +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  349 EMADQARMPYTNAVIHEVQRFADIAPLNLPCITSRDIEVQGFLIPKGTTLITNLSSVLKDETVWEKPLHFHPEHFLDAQGCFVKQE-AFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2DK_MESAU (Cytochrome P450 2D20 OS=Mesocricetus auratus GN=CYP2D20 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 43/124 (34.68%), Postives = 61/124 (49.19%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E +D  R+PY  AV+ E                 +DVE+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +   F  Q    +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  349 EMADQARMPYTNAVIHEVQRFGDIAPVNVPHMTSRDVEVQGFLIPKGTTLIPNLSSVLKDETVWEKPLHFHPEHFLDAQGRFVKQE-AFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2DI_RAT (Cytochrome P450 2D18 OS=Rattus norvegicus GN=Cyp2d18 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 40/124 (32.26%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E +D  R+P+  AV+ E                 +D+E+ GF +PKG  + +N+ ++ +DE+ W+ P  F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  349 EMADQARMPFTNAVIHEVQRFADILPLGVPHKTSRDIEVQGFLIPKGTTLIINLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2D6_HUMAN (Cytochrome P450 2D6 OS=Homo sapiens GN=CYP2D6 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 43/125 (34.40%), Postives = 62/125 (49.60%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E  D   +PY  AV+ E                 +D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L   SL+  F + +
Sbjct:  346 EMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSV 468          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP1A1_SHEEP (Cytochrome P450 1A1 OS=Ovis aries GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = -2
Query:  234 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQPLH 665
            SD  +LPYL+A + E                 +D  + GF +PKG  VFVN W I  D+  W++P  F PERFL ++    K  + ++I FG G+R C G  +A   + L L  L++  ++ +     +DM   +GLT++ A+  H
Sbjct:  367 SDRPQLPYLEAFILETFRHSSFVPFTIPHSTTRDTNLNGFYIPKGXCVFVNQWQINHDQKLWEDPSEFRPERFLTTDGTVNKVLSEKVIIFGLGKRQCIGEIIARLEVFLFLAILLHQVEFHVTPGVKVDMTPLYGLTMKHARCEH 512          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP1A1_HUMAN (Cytochrome P450 1A1 OS=Homo sapiens GN=CYP1A1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 48/142 (33.80%), Postives = 71/142 (50.00%), Query Frame = -2
Query:  246 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKA 665
            SD + LPY++A + E                 +D  + GF +PKG  VFVN W I  D+  W NP  F+PERFL    A  K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +GLT++ A
Sbjct:  360 SDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVPLGVKVDMTPIYGLTMKHA 501          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: C79B2_ARATH (Tryptophan N-hydroxylase 1 OS=Arabidopsis thaliana GN=CYP79B2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 40/135 (29.63%), Postives = 65/135 (48.15%), Query Frame = -2
Query:  276 IEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDME 674
            ++ESDI +L Y++A+++E                  D  +AG+ +PKG+QV ++ + +GR+   W +P  F PER L   S       +   I F  G+R C    L   +  +ML  L+  F WKL  +   +E
Sbjct:  376 VQESDIPKLNYVKAILREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWADPLCFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTALTTMMLARLLQGFTWKLPENETRVE 510          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2DF_CANFA (Cytochrome P450 2D15 OS=Canis familiaris GN=CYP2D15 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 41/124 (33.06%), Postives = 60/124 (48.39%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E  D TR+P+  AV+ E                 +D E+ GF +PKG  +  N+ ++ +DE  W  P  F PE FL +   F  ++   +PF AGRR+C G PLA   L L    L+  F + +
Sbjct:  349 EMGDQTRMPFTVAVIHEVQRFGDIVPLGVPHMTSRDTEVQGFLIPKGTTLITNLSSVLKDEKVWKKPFRFYPEHFLDAQGHFV-KHEAFMPFSAGRRVCLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2DE_BOVIN (Cytochrome P450 2D14 OS=Bos taurus GN=CYP2D14 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 43/124 (34.68%), Postives = 60/124 (48.39%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E  D   +P+  AVV E                 +D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +   F  Q    IPF AGRR C G PLA   L L   SL+  F + +
Sbjct:  349 EMGDQALMPFTVAVVHEVQRFADIVPLGLPHMTSRDIEVQGFHIPKGTTLITNLSSVLKDETVWEKPFRFHPEHFLDAQGRFVKQE-AFIPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSV 471          
The following BLAST results are available for this feature:
BLAST of CF835258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
C79B3_ARATH6.093e-1430.71Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana... [more]
CP2DS_MESAU7.958e-1433.87Cytochrome P450 2D28 OS=Mesocricetus auratus GN=CY... [more]
CP2DK_MESAU7.958e-1434.68Cytochrome P450 2D20 OS=Mesocricetus auratus GN=CY... [more]
CP2DI_RAT7.958e-1432.26Cytochrome P450 2D18 OS=Rattus norvegicus GN=Cyp2d... [more]
CP2D6_HUMAN7.958e-1434.40Cytochrome P450 2D6 OS=Homo sapiens GN=CYP2D6 PE=1... [more]
CP1A1_SHEEP7.958e-1432.88Cytochrome P450 1A1 OS=Ovis aries GN=CYP1A1 PE=2 S... [more]
CP1A1_HUMAN1.039e-1333.80Cytochrome P450 1A1 OS=Homo sapiens GN=CYP1A1 PE=1... [more]
C79B2_ARATH1.039e-1329.63Tryptophan N-hydroxylase 1 OS=Arabidopsis thaliana... [more]
CP2DF_CANFA1.357e-1333.06Cytochrome P450 2D15 OS=Canis familiaris GN=CYP2D1... [more]
CP2DE_BOVIN1.357e-1334.68Cytochrome P450 2D14 OS=Bos taurus GN=CYP2D14 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835258 ID=CF835258; Name=CF835258; organism=Citrus sinensis; type=EST; length=693bp
TTTTTTAATACAGTCAGATTTTAATGCTATTAAATCGCATGACTTTATAG
TTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAAAAAATA
AGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAACCACCAA
GCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCTACGAAC
TATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTTGAGCCT
TCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGGTTATCA
AGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATGTAACAT
TCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTCCGAAGG
GAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCTAAGAAC
CTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATCTCTGCC
AATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTGTGAAGC
CTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAGGGAGCT
GCAGGGTGCAATCTCAAAGTTTCTTTAACAACAGCTTGTAGATAAGGTAG
CCGAGTGATGTCAGATTCCTCAATTGGGTTACACTTGCAAACT
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