CF835258

Overview
NameCF835258
Unique NameCF835258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: C79B1_SINAL (Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 39/135 (28.89%), Postives = 66/135 (48.89%), Query Frame = -2
Query:  276 IEESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDME 674
            ++ESDI +L Y++A+++E                  D  +AG+ +PKG+QV ++ + +GR+   W +P +F PER L   S       +   I F  G+R C    L   +  ++L  L+  F WKL  +   +E
Sbjct:  377 VQESDIPKLNYVKAILREAFRLHPVAAFNLPHVALSDATVAGYHIPKGSQVLLSRYGLGRNPKVWADPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTALTTMLLARLLQGFTWKLPENETRVE 511          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2D4_RAT (Cytochrome P450 2D4 OS=Rattus norvegicus GN=Cyp2d4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E +D  R+P+  AV+ E                 +D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  349 EMADQARMPFTNAVIHEVQRFADILPLGVPHKTSRDIEVQGFLIPKGTTLITNLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP1A1_MACMU (Cytochrome P450 1A1 OS=Macaca mulatta GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = -2
Query:  246 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKA 665
            SD + LPY++A + E                 +D  + GF +PKG  VFVN W I  D+  W NP  F+PERF+    A  K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +GLT++ A
Sbjct:  360 SDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFITPDGAIDKVLSEKVILFGLGKRKCIGETIARWEVFLFLAILLQRVEFSVPPGVKVDMTPIYGLTMKHA 501          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP1A1_MACFA (Cytochrome P450 1A1 OS=Macaca fascicularis GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = -2
Query:  246 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKA 665
            SD + LPY++A + E                 +D  + GF +PKG  VFVN W I  D+  W NP  F+PERF+    A  K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +GLT++ A
Sbjct:  360 SDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFITPDGAIDKVLSEKVILFGLGKRKCIGETIARWEVFLFLAILLQRVEFSVPPGVKVDMTPIYGLTMKHA 501          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2DR_MESAU (Cytochrome P450 2D27 OS=Mesocricetus auratus GN=CYP2D27 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 42/124 (33.87%), Postives = 61/124 (49.19%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E +D  R+PY  AV+ E                  DVE+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +   F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  349 EMADQARMPYTNAVIHEVQRFGDIAPVNIPHMTSHDVEVQGFLIPKGTTLIPNLSSVLKDETVWEKPLHFHPEHFLDAQGRFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP17A_SQUAC (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalus acanthias GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 46/141 (32.62%), Postives = 65/141 (46.10%), Query Frame = -2
Query:  252 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFE-LIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTVQ 665
            SD   + +L A + E                  D  I  +T+PKG +V +N+WAI  DE  W NP  F P RFL  +  +   + E  +PFGAG R+C G  LA   L L    ++  F  ++       D E KFG+ +Q
Sbjct:  348 SDKGNMNFLNATIHEILRIQPVSPLLIPHVALADSSIGDYTIPKGTRVIINLWAIHHDEKEWKNPDAFDPGRFLDEDGKYVCSSSESYLPFGAGTRVCLGEMLARMELFLFTSWILQRFTVQVPPGYPPPDKEGKFGIVLQ 488          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP17A_ONCMY (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oncorhynchus mykiss GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 49/155 (31.61%), Postives = 73/155 (47.10%), Query Frame = -2
Query:  219 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL---GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHN--MDMEDKFGLTVQKAQ-PLHAVPGA 665
            SD   LPYL+A ++E                  D  I  FTV KGA++ +N+W++  DE  W NP  F P RFL   G+       ++  +PFGAG R+C G  LA   + L L  ++      +        +E KFG+ +Q  +  ++A P A
Sbjct:  352 SDRGSLPYLEATIREVLRIRPVAPLLIPHVAQTDTSIGKFTVRKGARIIINLWSLHHDEKEWKNPEMFDPGRFLNEEGTGLCIPSPSY--LPFGAGVRVCLGEALAKMEIFLFLSWILQRLTMTVSPGQPLPSLEGKFGVVLQPVKYKVNATPRA 504          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2R1_MOUSE (Vitamin D 25-hydroxylase OS=Mus musculus GN=Cyp2r1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 43/135 (31.85%), Postives = 68/135 (50.37%), Query Frame = -2
Query:  252 RLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNM-DMEDKFGLTVQ 653
            ++PY +AV+ E                 +D  + G+++PKG  V  N++++  DE  W +P  F PERFL SN  F  +   LIPF  GRR C G  LA   + L   SL+  F     +  + +++ + G+T+Q
Sbjct:  357 KMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWKDPDMFYPERFLDSNGYFTKKE-ALIPFSLGRRHCLGEQLARMEMFLFFTSLLQQFHLHFPHELVPNLKPRLGMTLQ 490          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP1A1_FELCA (Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = -2
Query:  234 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDMEDKFGLTVQKAQPLH 665
            SD  +LPY++A + E                 KD  ++GF +PK   VFVN W I  D+  W +P  F PERFL  +    K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +GLT++ A+  H
Sbjct:  365 SDRLQLPYMEAFILEMFRHTSFVPFTIPHSTTKDTSLSGFYIPKERCVFVNQWQINHDQKLWGDPSEFRPERFLTPDGTINKALSEKVILFGLGKRKCIGETIARLEVFLFLAILLQQVEFSVPQGTKVDMTPIYGLTMKHARCEH 510          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: C508C_DICDI (Probable cytochrome P450 508C1 OS=Dictyostelium discoideum GN=cyp508c1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = -2
Query:  255 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIA--GFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK-LDNHNMDMEDKFGLTV 665
            SD    PY+QA++KE                  D+ I    + +PKG +VF+N  +IG +E  + +P+ F P RFL  N++    +F   PFG G R+C G  LA   L+L++ +LI  +  K +D + ++ +  FGLTV
Sbjct:  347 SDRPNTPYIQAIIKETMRMHPVVVFGLPRYCENDIFIGDENYFIPKGCKVFINFHSIGYNEKYFKDPYKFEPNRFL-ENSNNSMDSF--FPFGLGNRVCLGRQLANDQLYLVIANLILKYKLKTIDENKINEDGIFGLTV 483          
The following BLAST results are available for this feature:
BLAST of CF835258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
C79B1_SINAL1.357e-1328.89Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE... [more]
CP2D4_RAT1.773e-1332.26Cytochrome P450 2D4 OS=Rattus norvegicus GN=Cyp2d4... [more]
CP1A1_MACMU1.773e-1333.10Cytochrome P450 1A1 OS=Macaca mulatta GN=CYP1A1 PE... [more]
CP1A1_MACFA1.773e-1333.10Cytochrome P450 1A1 OS=Macaca fascicularis GN=CYP1... [more]
CP2DR_MESAU2.315e-1333.87Cytochrome P450 2D27 OS=Mesocricetus auratus GN=CY... [more]
CP17A_SQUAC2.315e-1332.62Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalu... [more]
CP17A_ONCMY2.315e-1331.61Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oncorh... [more]
CP2R1_MOUSE3.024e-1331.85Vitamin D 25-hydroxylase OS=Mus musculus GN=Cyp2r1... [more]
CP1A1_FELCA3.024e-1332.19Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 ... [more]
C508C_DICDI3.950e-1333.57Probable cytochrome P450 508C1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835258 ID=CF835258; Name=CF835258; organism=Citrus sinensis; type=EST; length=693bp
TTTTTTAATACAGTCAGATTTTAATGCTATTAAATCGCATGACTTTATAG
TTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAAAAAATA
AGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAACCACCAA
GCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCTACGAAC
TATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTTGAGCCT
TCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGGTTATCA
AGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATGTAACAT
TCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTCCGAAGG
GAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCTAAGAAC
CTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATCTCTGCC
AATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTGTGAAGC
CTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAGGGAGCT
GCAGGGTGCAATCTCAAAGTTTCTTTAACAACAGCTTGTAGATAAGGTAG
CCGAGTGATGTCAGATTCCTCAATTGGGTTACACTTGCAAACT
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