CF835258

Overview
NameCF835258
Unique NameCF835258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2J3_RAT (Cytochrome P450 2J3 OS=Rattus norvegicus GN=Cyp2j3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 47/149 (31.54%), Postives = 69/149 (46.31%), Query Frame = -2
Query:  225 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQK-AQPLHAVP 665
            +D   +PY  AV+ E                  D  +AGF +PKG  +  N+ A+ RD   W  P TF PE FL  N  FK +    +PF  G+R C G  LA   L + + SLI  F +K   N  + ++ +  +T+   +  L A+P
Sbjct:  354 ADRDSMPYTNAVIHEVQRIGNIIPFNVPREVAVDTYLAGFNLPKGTMILTNLTALHRDPKEWATPDTFNPEHFL-ENGQFKKRE-SFLPFSMGKRACLGEQLARSELFIFITSLIQKFTFKPPVNEKLSLQFRMSVTISPVSHRLCAIP 500          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2DA_RAT (Cytochrome P450 2D10 OS=Rattus norvegicus GN=Cyp2d10 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E +D   +PY  AV+ E                  D+E+  F +PKG  + +N+ ++ +DE+ W+ P  F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  349 EMTDQAHMPYTNAVIHEVQRFGDIAPLNLPRITSCDIEVQDFVIPKGTTLIINLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQHFSFSV 471          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2DA_MOUSE (Cytochrome P450 2D10 OS=Mus musculus GN=Cyp2d10 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 43/127 (33.86%), Postives = 64/127 (50.39%), Query Frame = -2
Query:  294 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDN 671
            E +D  R+PY  AV+ E                 +D+E+  F +PKG+ +  N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L    L+  F + + N
Sbjct:  349 EMADQARMPYTNAVIHEVQRFGDIAPLNLPRITSRDIEVQDFLIPKGSILIPNMSSVLKDETVWEKPLRFHPEHFLDAQGHFVKPEAF--MPFSAGRRSCLGEPLARMELFLFFTCLLQHFSFSVPN 473          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP17A_RAT (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rattus norvegicus GN=Cyp17a1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = -2
Query:  309 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL---GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 665
            +D + L  L+A ++E                  D  I  FTVPK   V VN+WA+  DE+ WD P  F+PERFL   GS+     Q++  +PFGAG R C G  LA + L +    L+  FD
Sbjct:  344 NDRSHLLMLEATIREVLRIRPVAPMLIPHKANVDSSIGEFTVPKDTHVVVNLWALHHDENEWDQPDQFMPERFLDPTGSHLITPTQSY--LPFGAGPRSCIGEALARQELFVFTALLLQRFD 463          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2DP_PIG (Vitamin D(3) 25-hydroxylase OS=Sus scrofa GN=CYP2D25 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 40/124 (32.26%), Postives = 59/124 (47.58%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E  D   +P+  AV+ E                  D+E+ GF +PKG  +  N+ ++ +DE+ W  P  F PE FL +   F  Q    +PF AGRR C G PLA   L L   +L+ +F + +
Sbjct:  349 EIKDQALMPFTLAVLHEVQRFGDIVPLGVAHMTSCDIEVQGFLIPKGTTLITNLTSVLKDETVWKKPFRFYPEHFLDAQGRFTKQE-AFMPFSAGRRSCLGEPLARMELFLFFTTLLQAFSFSV 471          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP1A1_MESAU (Cytochrome P450 1A1 OS=Mesocricetus auratus GN=CYP1A1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = -2
Query:  243 DITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKAQ 662
            D ++LPYL+A + E                 +D  + GF +PKG  VFVN W I  ++  W +P+ F PERFL S+    K  + ++  FG G+R C G  +    + L L  L+   ++ +     +DM   +GLT++ A+
Sbjct:  365 DRSQLPYLEAFILETFRHSSFLPFTIPHSTTRDTSLCGFYIPKGHCVFVNQWQINHNQELWGDPNKFRPERFLTSSGTLDKVLSGKVTLFGLGKRKCIGETIGRLEVFLFLAILLQQIEFTVSPGEKVDMTPIYGLTLKHAR 506          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2R1_HUMAN (Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 42/138 (30.43%), Postives = 69/138 (50.00%), Query Frame = -2
Query:  252 DITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNM-DMEDKFGLTVQ 662
            D  ++PY +AV+ E                 +D  + G+++PKG  V  N++++  DE  W +P  F PERFL S+  F  +   L+PF  GRR C G  LA   + L   +L+  F     +  + D++ + G+T+Q
Sbjct:  354 DKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYF-AKKEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQ 490          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP2D3_RAT (Cytochrome P450 2D3 OS=Rattus norvegicus GN=Cyp2d3 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = -2
Query:  300 EESDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 671
            E +D   +P+  AV+ E                 +D+E+ GF +PKG  +  N+ ++ +DE+ W+ P  F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  349 EMADQAHMPFTNAVIHEVQRFADIVPMNLPHKTSRDIEVQGFLIPKGTTLIPNLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: CP17A_PERLE (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Peromyscus leucopus GN=Cyp17a1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 40/120 (33.33%), Postives = 58/120 (48.33%), Query Frame = -2
Query:  309 SDITRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL-GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 665
            +D   L  L+A ++E                  D  I  FT+PK   V +N+WA+  +E  WD P  F+PERFL  + +     +   +PFGAG R C G  LA ++L L +  L+  FD
Sbjct:  343 NDRNHLLMLEATIREVLRIRPVAPMLIPHKANIDSSIGEFTIPKDTHVVINLWALHHNEKEWDQPDRFMPERFLDATGSHLITPSLSYLPFGAGPRACIGEVLARQVLFLYVACLLQRFD 462          
BLAST of CF835258 vs. ExPASy Swiss-Prot
Match: C516A_DICDI (Probable cytochrome P450 516A1 OS=Dictyostelium discoideum GN=cyp516a1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 38/136 (27.94%), Postives = 70/136 (51.47%), Query Frame = -2
Query:  252 TRLPYLQAVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHN-MDMEDKFGLTVQ 656
            ++ P+  A +KE                 +DV    +T+ KG+Q+ +NV+ +  D + W++P TF P R+L S  D     +  IPFG G R+C G  LA   + L +G+++ ++ ++  N   ++ +  FG+ +Q
Sbjct:  343 SKTPFFNACIKEALRIRPVGALSLPRIASEDVTCGPYTIEKGSQIIMNVYGLAMDPTVWEDPETFNPYRWLSS--DISQSTYSFIPFGCGSRVCVGSSLARDEIFLGIGNILLNYIFESQNGKPINEKGHFGIALQ 476          
The following BLAST results are available for this feature:
BLAST of CF835258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
CP2J3_RAT5.158e-1331.54Cytochrome P450 2J3 OS=Rattus norvegicus GN=Cyp2j3... [more]
CP2DA_RAT5.158e-1331.45Cytochrome P450 2D10 OS=Rattus norvegicus GN=Cyp2d... [more]
CP2DA_MOUSE5.158e-1333.86Cytochrome P450 2D10 OS=Mus musculus GN=Cyp2d10 PE... [more]
CP17A_RAT6.737e-1336.89Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rattus... [more]
CP2DP_PIG8.799e-1332.26Vitamin D(3) 25-hydroxylase OS=Sus scrofa GN=CYP2D... [more]
CP1A1_MESAU8.799e-1330.99Cytochrome P450 1A1 OS=Mesocricetus auratus GN=CYP... [more]
CP2R1_HUMAN1.149e-1230.43Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1... [more]
CP2D3_RAT1.149e-1231.45Cytochrome P450 2D3 OS=Rattus norvegicus GN=Cyp2d3... [more]
CP17A_PERLE1.149e-1233.33Steroid 17-alpha-hydroxylase/17,20 lyase OS=Peromy... [more]
C516A_DICDI1.149e-1227.94Probable cytochrome P450 516A1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06O20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835258 ID=CF835258; Name=CF835258; organism=Citrus sinensis; type=EST; length=693bp
TTTTTTAATACAGTCAGATTTTAATGCTATTAAATCGCATGACTTTATAG
TTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAAAAAATA
AGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAACCACCAA
GCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCTACGAAC
TATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTTGAGCCT
TCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGGTTATCA
AGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATGTAACAT
TCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTCCGAAGG
GAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCTAAGAAC
CTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATCTCTGCC
AATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTGTGAAGC
CTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAGGGAGCT
GCAGGGTGCAATCTCAAAGTTTCTTTAACAACAGCTTGTAGATAAGGTAG
CCGAGTGATGTCAGATTCCTCAATTGGGTTACACTTGCAAACT
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