CF835266

Overview
NameCF835266
Unique NameCF835266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = -2
Query:  267 DQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPE 527
            DQ  S  + EG +V+A+F A WCGPC+MIAP   EL ++    L  + +DVDE  E +  + + + PT   LKDG+ V+  VG    E
Sbjct:    8 DQSFSAETSEG-VVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKE 94          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: TXNL1_RAT (Thioredoxin-like protein 1 OS=Rattus norvegicus GN=Txnl1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = -2
Query:  252 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 494
            ++ +  F+   CGPC  IAP FS +S KYP  +FL VDV +    + + +I ATPTF F ++  ++D+  GA+   L++K+
Sbjct:   23 RLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKI 103          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: TXNL1_MOUSE (Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = -2
Query:  252 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 494
            ++ +  F+   CGPC  IAP FS +S KYP  +FL VDV +    + + +I ATPTF F ++  ++D+  GA+   L++K+
Sbjct:   23 RLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKI 103          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: TXNL1_HUMAN (Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = -2
Query:  252 KIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKV 494
            ++ +  F+   CGPC  IAP FS +S KYP  +FL VDV +    + + +I ATPTF F ++  ++D+  GA+   L++K+
Sbjct:   23 RLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKI 103          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = -2
Query:  279 EASKEGKIVIANFSATWCGPCRMIAPFFSELSEKY-PSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA 512
            E     K+V+ +F A WCGPCRMI+P   EL+++Y   +  + ++ DE    S  + I++ PT    KDG++VD ++GA
Sbjct:   15 EVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGA 93          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO4_DICDI (Putative thioredoxin-4 OS=Dictyostelium discoideum GN=trxD PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 35/100 (35.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:  258 VSLVTTKDIWDQKMSEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQK 557
            +S VT   I + K+ E  K G  VI NF A WCG C+++ P F++LS +YP + FL V++D++    ++  I + PT    + G++  ++V  N+ +L+K
Sbjct:    1 MSKVTNVSI-NTKLDELLK-GDQVIINFGAEWCGACKVLEPIFNKLSTQYPLVTFLKVEIDKINVHESTKSITSIPTIMLYQKGKKTKEIVSPNETQLRK 98          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = -2
Query:  234 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 503
            K   +++ +F A W   C  +    +EL++++P + F+ ++ + + E S  ++I + PTF F K+ Q+VD+L GA+ PEL KKV   V S
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSS 120          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.209e-11
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = -2
Query:  234 KEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGANKPELQKKVAAAVDS 503
            K   +++ +F A W   C  +    +EL++++P + F+ ++ + + E S  ++I + PTF F K+ Q+VD+L GA+ PEL KKV   V S
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSS 120          
BLAST of CF835266 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = -2
Query:  279 SEASKEGKIVIANFSATWCGPCRMIAPFFSELSEKYPSLMFLLVDVDELVEFSTSWDIKATPTFFFLKDGQQVDKLVGA 515
            +E  +  K+V+ +F A WCGPCRMI P   E+++++ +L  + V+ DE    +T + I++ PT    K GQ+VD ++GA
Sbjct:   11 NEVLQSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGA 88          
The following BLAST results are available for this feature:
BLAST of CF835266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
THIO_BACSU3.236e-1140.91Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
TXNL1_RAT4.227e-1138.27Thioredoxin-like protein 1 OS=Rattus norvegicus GN... [more]
TXNL1_MOUSE4.227e-1138.27Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl... [more]
TXNL1_HUMAN4.227e-1138.27Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL... [more]
THIO_CYACA4.227e-1137.97Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO4_DICDI4.227e-1135.00Putative thioredoxin-4 OS=Dictyostelium discoideum... [more]
GLRX3_RAT7.209e-1134.44Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
GLRX3_MOUSE7.209e-1134.44Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]
THIO_CYAME9.416e-1137.97Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06P01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835266 ID=CF835266; Name=CF835266; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTCCTTTCATTGTTTCATGAACAGGGTTGGATCGTTT
CACAAATCACATAAGCAGCCATTTCTACAGAAAGTACTGCATAAATATAC
AACCAAAAAAAAAAAAAAATCTTGCAATCAAGCAATCTTATCTAACTACT
AGCACAGAAACATACACAGATTGGTGGCAATGCTAACACAGATTGGACGA
CCATTGTAATCATCATTTTTGACTTGGGACAACTGAGTCTACAGCCGCCG
CTACCTTCTTCTGTAGCTCTGGCTTGTTTGCTCCAACTAGCTTGTCAACT
TGCTGCCCATCTTTAAGAAAGAAGAAAGTTGGAGTGGCTTTGATATCCCA
TGAAGTGCTGAACTCAACTAGTTCATCAACATCGACCAAAAGGAACATTA
ACGAAGGGTATTTCTCAGATAGCTCGCTGAAAAATGGTGCAATCATTCTA
CAAGGACCACACCATGTTGCGCTGAAGTTCGCAATCACTATCTTCCCTTC
CTTACTAGCTTCTGACATCTTTTGGTCCCATATATCTTTGGTAGTAACAA
GACTCACATTCCCACCAGCAAACTCAACAGGGTGTTCACCATCCTCCTCA
TCATGTTGACGCTTGGACAAACACGTTCCCATATTGAAGCTTTGA
back to top