CF835272

Overview
NameCF835272
Unique NameCF835272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_ECO24 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=metE PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.288e-52
Identity = 102/164 (62.20%), Postives = 119/164 (72.56%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P I+ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEV DLE AGI +IQIDE ALREGLPLR+S+   YL W V +FRI     +D TQIHTHMCY  FNDI+ SI  +DADVITIE SRSD +LL  F E
Sbjct:  516 CVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEAFRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEE 679          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_DESVH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=metE PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.288e-52
Identity = 100/162 (61.73%), Postives = 123/162 (75.93%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P ++YGDVSRP+ MTV WS+ A+S+TARPMK MLTGPVTI  WSFVR+D  R     Q+ALA++DEV DLE AG+ V+Q+DE ALREGLPLR++    YLD AV +FR+   GV D TQ+HTHMCY +F+DII  I  MDADVI++E SRS  +LL VF
Sbjct:  545 CVKPPLLYGDVSRPEPMTVAWSAYARSLTARPMKAMLTGPVTIACWSFVRDDISRETVLRQLALALRDEVADLESAGLAVVQVDEPALREGLPLRRAAQEAYLDAAVRAFRLATSGVADATQLHTHMCYCDFHDIIDRIAGMDADVISLEASRSRMELLDVF 706          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_AERS4 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Aeromonas salmonicida (strain A449) GN=metE PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.288e-52
Identity = 99/162 (61.11%), Postives = 121/162 (74.69%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P +I  D+ RP  MT+ W+  AQS+T +P+KGMLTGPVTIL WSF R D  R ++  QI LAI+DEV DLE AGI +IQIDE A+REGLPLRK +H  YLDWAV +FR++   V D+TQIHTHMCYS+FN II ++  +DADVITIE SRS  +LL  F
Sbjct:  515 CVKPPVITTDIDRPTPMTLEWTKFAQSLTDKPVKGMLTGPVTILCWSFPREDVSREQSALQIGLAIRDEVADLEAAGIKIIQIDEPAIREGLPLRKQDHQAYLDWAVRAFRLSASPVVDSTQIHTHMCYSDFNLIIEAVAALDADVITIETSRSQMQLLEAF 676          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_VIBVU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Vibrio vulnificus GN=metE PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 3.903e-52
Identity = 97/164 (59.15%), Postives = 123/164 (75.00%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P+I+  D+ R + +TV WS+ AQS+T++ MKGMLTGPVTIL W+F R D  R     Q+ALA++DEV DL+ AGIN+IQIDE A+REGLPL+K +H  YLDWAV +FRI+    +  TQIHTHMCYS FN+II S+  +DADVITIE SRS+ +LL  F E
Sbjct:  521 CVKPAIVVADIEREQPITVGWSTYAQSLTSKQMKGMLTGPVTILCWTFPREDISRKAIAQQLALALRDEVSDLQDAGINIIQIDEPAIREGLPLKKRDHQNYLDWAVEAFRISAASARPETQIHTHMCYSEFNEIIESVAALDADVITIETSRSNMELLKAFEE 684          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_BUCAI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metE PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 3.903e-52
Identity = 104/164 (63.41%), Postives = 122/164 (74.39%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRE 494
            CV P II GD+SRPK MT+ WS  AQS+T +P+KGMLTGPVTIL WSF R D    +   QIALA+ DEV DLEK  I +IQIDE ALREGLPLRKS    YL WAV  FR++  GV++TTQIHTHMCY  FNDI+ SI  +DADVITIE +RSD +LL  F++
Sbjct:  514 CVKPPIIIGDISRPKPMTIEWSKYAQSLTKKPVKGMLTGPVTILLWSFPREDVSLKKIATQIALALYDEVLDLEKEKIEIIQIDEPALREGLPLRKSSWHEYLSWAVDVFRLSASGVKNTTQIHTHMCYCEFNDIMDSIALLDADVITIEAARSDMELLESFKK 677          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_KLEP3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Klebsiella pneumoniae (strain 342) GN=metE PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.097e-52
Identity = 100/162 (61.73%), Postives = 120/162 (74.07%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P ++ GDVSRP+A+TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEV DLE AGI +IQIDE ALREGLPL++S+   YL W V +FR+     +D TQIHTHMCY  FNDI+ SI  +DADVITIE SRSD +LL  F
Sbjct:  516 CVKPPVVIGDVSRPQAITVDWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLKRSDWDAYLQWGVEAFRLNAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESF 677          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_ACICJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidiphilium cryptum (strain JF-5) GN=metE PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.097e-52
Identity = 98/162 (60.49%), Postives = 121/162 (74.69%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P II+GDV+RP+ MTV W+  AQS+TARP+KGMLTGPVT+L WSFVR+D PR   C QIALA++DEV DLE AG+ +IQ+DE A REGLPLR ++   YL WAV  FR+    V+D T IHTHMCY+ F DI+ +I  MDAD I+IE +RS  +LL  F
Sbjct:  525 CVAPPIIWGDVARPRPMTVRWARHAQSLTARPVKGMLTGPVTMLQWSFVRDDLPRETVCRQIALALRDEVADLEAAGLAIIQVDEPAFREGLPLRTADREAYLRWAVSCFRLATAVVRDDTAIHTHMCYAEFQDIMPAIATMDADAISIETARSRMELLEAF 686          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_SALTY (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella typhimurium GN=metE PE=3 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 6.657e-52
Identity = 100/162 (61.73%), Postives = 119/162 (73.46%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P ++ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEV DLE AGI +IQIDE ALREGLPLR+S+   YL+W V +FRI     +D TQIHTHMCY  FNDI+ SI  +DADVITIE SRSD +LL  F
Sbjct:  516 CVKPPVVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVTRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLEWGVEAFRINAAVAKDETQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESF 677          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_SALTI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella typhi GN=metE PE=3 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 6.657e-52
Identity = 100/162 (61.73%), Postives = 119/162 (73.46%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P ++ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEV DLE AGI +IQIDE ALREGLPLR+S+   YL+W V +FRI     +D TQIHTHMCY  FNDI+ SI  +DADVITIE SRSD +LL  F
Sbjct:  516 CVKPPVVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVTRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLEWGVEAFRINAAVAKDETQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESF 677          
BLAST of CF835272 vs. ExPASy Swiss-Prot
Match: METE_SALSV (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=metE PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 6.657e-52
Identity = 100/162 (61.73%), Postives = 119/162 (73.46%), Query Frame = 3
Query:    3 CVNPSIIYGDVSRPKAMTVFWSSLAQSMTARPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVF 488
            CV P ++ GD+SRP  +TV W+  AQS+T +P+KGMLTGPVTIL WSF R D  R     QIALA++DEV DLE AGI +IQIDE ALREGLPLR+S+   YL+W V +FRI     +D TQIHTHMCY  FNDI+ SI  +DADVITIE SRSD +LL  F
Sbjct:  516 CVKPPVVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVTRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLEWGVEAFRINAAVAKDETQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESF 677          
The following BLAST results are available for this feature:
BLAST of CF835272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_ECO242.288e-5262.205-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESVH2.288e-5261.735-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_AERS42.288e-5261.115-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_VIBVU3.903e-5259.155-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BUCAI3.903e-5263.415-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_KLEP35.097e-5261.735-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACICJ5.097e-5260.495-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALTY6.657e-5261.735-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALTI6.657e-5261.735-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SALSV6.657e-5261.735-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835272 ID=CF835272; Name=CF835272; organism=Citrus sinensis; type=EST; length=513bp
GCTGTGTGAACCCATCCATCATCTATGGTGACGTGAGCCGTCCCAAGGCT
ATGACCGTCTTCTGGTCCTCCTTGGCTCAGAGCATGACTGCTCGCCCAAT
GAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAACTGGTCCTTTGTCA
GAAATGACCAGCCCAGACATGAAACCTGCTACCAGATTGCTTTGGCCATC
AAGGACGAAGTCGAGGATCTTGAGAAGGCAGGCATTAACGTTATTCAAAT
TGATGAGGCTGCCTTGAGGGAAGGATTGCCTCTTAGGAAATCTGAGCATG
CTTTCTACTTGGACTGGGCAGTCCACTCCTTCAGAATCACCAACTGTGGT
GTCCAGGACACTACCCAGATCCACACCCACATGTGCTACTCCAACTTCAA
CGACATTATCCACTCAATTATCGACATGGATGCTGATGTGATCACCATTG
AGAACTCTCGTTCTGATGAGAAGCTCCTGTCTGTCTTCCGTGAGGGAGTC
AAGTATGGTGCTG
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