CF835282

Overview
NameCF835282
Unique NameCF835282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835282_ssr163 microsatellite CF835282_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig940 contig Csv1_Contig940:567..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 67/143 (46.85%), Postives = 84/143 (58.74%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D+VALSGAHT G+AQC  F DR+Y  N T      +D       R  CPQ G    LA  D+ TP+ FDN YF NL  +KGLLQSDQ LF+  G  T  IV ++  +  AF  +F  +MI+MG++ PL+G  G IR  C  VN
Sbjct:  188 DMVALSGAHTIGQAQCFLFRDRIYS-NGTD-----IDAGFASTRRRQCPQEGENGNLAPLDLVTPNQFDNNYFKNLIQKKGLLQSDQVLFN--GGSTDNIVSEYSNSARAFSSDFAAAMIKMGDISPLSGQNGIIRKVCGSVN 322          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            DLVALSG HT G A C  F+DRLY        DPT+++     L+  CP   +     N D+++PD FDNKY+ +L  R+GL  SDQ+LF      T  IVE F  +Q  FF  F ++MI+MG +  LTG QGEIR NC   N
Sbjct:  205 DLVALSGGHTIGIAHCPSFTDRLYP-----NQDPTMNQFFANSLKRTCPTANSSNTQVN-DIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKR--TRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARN 339          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER42_MAIZE (Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.807e-26
Identity = 63/148 (42.57%), Postives = 85/148 (57.43%), Query Frame = -2
Query:  192 DKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGN 635
            D  D+VALSGAHT G+AQC  F+  +Y+       D  ++      L+  CP  G G+ LA  D  TP  F N Y+ NL  +KGLL SDQELF+    D+   V +F  +  AF   F  +M++MGNL PLTG  G+IRL C ++N +
Sbjct:  184 DATDMVALSGAHTIGQAQCSSFNGHIYN-------DTNINAAFATSLKANCPMSG-GSSLAPLDTMTPTVFGNDYYKNLLSQKGLLHSDQELFNNGSTDST--VSNFASSSAAFTSAFTAAMVKMGNLGPLTGTSGQIRLTCWKLNSS 321          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER70_MAIZE (Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.067e-25
Identity = 68/145 (46.90%), Postives = 84/145 (57.93%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQG-GNG-AVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            DLVALSGAHT G AQCK F   +Y+       D  V+       R  CP   GNG   LA  D  TP AFDN Y++NL  ++GLL SDQ+LF+  G  T  +V  +      F ++F  +MIRMGN+ PLTG QG+IR  C RVN
Sbjct:  186 DLVALSGAHTIGLAQCKNFRAHIYN-------DTNVNAAFATLRRANCPAAAGNGDGNLAPLDTATPTAFDNAYYTNLLAQRGLLHSDQQLFN--GGATDGLVRTYASTPRRFSRDFAAAMIRMGNISPLTGTQGQIRRACSRVN 321          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER67_ARATH (Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.820e-25
Identity = 62/145 (42.76%), Postives = 87/145 (60.00%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCP--QGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D+VALSGAHT GRAQC  F +R+Y+ +        +D +     R  CP   G      AN DV++PD FD+ ++  L  +KGLL SDQ LF+    D+  I   +  N  AF+++F  +MI+MG++ PLTG+ G+IR NCRR N
Sbjct:  181 DMVALSGAHTIGRAQCVTFRNRIYNASN-------IDTSFAISKRRNCPATSGSGDNKKANLDVRSPDRFDHGFYKQLLSKKGLLTSDQVLFNNGPTDSLVIA--YSHNLNAFYRDFARAMIKMGDISPLTGSNGQIRQNCRRPN 316          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.914e-25
Identity = 62/154 (40.26%), Postives = 89/154 (57.79%), Query Frame = -2
Query:  189 DKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCP---QGG--NGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 635
            D  D+  L GAH+ G+  C +  DRLY+F  TGKPDPT++ TL+ QLR LCP   Q G  +  V  N D  + + F + Y+S +     +L+ DQEL +    D+  I ++F      F K+F ++M RMG++  LTG  GEIR +CR  N N+
Sbjct:  187 DVLDMTTLLGAHSMGKTHCSYVVDRLYNFKNTGKPDPTMNTTLVSQLRYLCPPRTQKGQTDPLVYLNPDSGSSNRFTSSYYSRVLSHNAVLRVDQELLNND--DSKEITQEFASGFEDFRKSFALAMSRMGSINVLTGTAGEIRRDCRVTNAND 338          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER19_ARATH (Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.914e-25
Identity = 65/142 (45.77%), Postives = 85/142 (59.86%), Query Frame = -2
Query:  207 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCP-QGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQ-GEIRLNCR 626
            +LV LSG+HT G A CK F  RLYD+  T +PDP++D+ LLK+LR  CP  GG+  V+   D  TP  FDN YF+ L    GLL SDQ LF  P   T  I  +  R++  F K F  +M +MG++    G + GEIR +CR
Sbjct:  204 ELVVLSGSHTIGFAHCKNFLGRLYDYKGTKRPDPSLDQRLLKELRMSCPFSGGSSGVVLPLDATTPFVFDNGYFTGLGTNMGLLGSDQALFLDP--RTKPIALEMARDKQKFLKAFGDAMDKMGSIGVKRGKRHGEIRTDCR 343          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER71_ARATH (Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 66/151 (43.71%), Postives = 89/151 (58.94%), Query Frame = -2
Query:  198 VGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKP-DPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 647
            +GLN + DLV L G HT G A C  F +RL  FN TG+  DPT+D T L QL+  CPQ G+G+V  + D  +   +D  Y++NL   +G+LQSDQ L++ P   T  IV+     ++ F   F  SM+RM N+  +TG  GEIR  C  VN
Sbjct:  183 LGLNTR-DLVVLVGGHTIGTAGCGVFRNRL--FNTTGQTADPTIDPTFLAQLQTQCPQNGDGSVRVDLDTGSGSTWDTSYYNNLSRGRGVLQSDQVLWTDPA--TRPIVQQLMAPRSTFNVEFARSMVRMSNIGVVTGANGEIRRVCSAVN 328          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER68_ARATH (Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.540e-24
Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCP----QGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D+VALSGAHT G+A+C  F  R+Y+          +D +     R  CP     G N A +   D++TP+ FD  YF  L   +GLL SDQ LF+  G  T +IV  + R+  AF+++FV +MI+MG++ PLTG+ G+IR +CRR N
Sbjct:  190 DMVALSGAHTIGQARCVTFRSRIYN-------STNIDLSFALSRRRSCPAATGSGDNNAAI--LDLRTPEKFDGSYFMQLVNHRGLLTSDQVLFN--GGSTDSIVVSYSRSVQAFYRDFVAAMIKMGDISPLTGSNGQIRRSCRRPN 325          
BLAST of CF835282 vs. ExPASy Swiss-Prot
Match: PER51_ARATH (Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.627e-24
Identity = 59/143 (41.26%), Postives = 84/143 (58.74%), Query Frame = -2
Query:  198 DLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 626
            D++ALSGAHT G A C    +RLY+FNKT   DPT+++  + +L+  CPQ  +  V  N D  TP  FDN Y+ NL+  KGL  SDQ LF+   + +   V+ +  N   F + F+ SMI++G +   TG+ G IR +C   N
Sbjct:  189 DMIALSGAHTLGFAHCTKVFNRLYNFNKTNNVDPTINKDYVTELKASCPQNIDPRVAINMDPNTPRQFDNVYYKNLQQGKGLFTSDQVLFT--DSRSKPTVDLWANNGQLFNQAFISSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
The following BLAST results are available for this feature:
BLAST of CF835282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
PERX_NICSY2.149e-2646.85Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PER12_ARATH2.149e-2645.45Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER42_MAIZE2.807e-2642.57Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1[more]
PER70_MAIZE1.067e-2546.90Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1[more]
PER67_ARATH1.820e-2542.76Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=... [more]
PER61_ARATH6.914e-2540.26Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER19_ARATH6.914e-2545.77Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=... [more]
PER71_ARATH1.540e-2443.71Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=... [more]
PER68_ARATH1.540e-2442.18Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=... [more]
PER51_ARATH2.627e-2441.26Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835282 ID=CF835282; Name=CF835282; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTCCATTAACTCAAGTTTGATAGTTAATTTATTTGAAAACACC
TCTCATGTTTCAGGCCAAACGATAAGATTAAATTCGAGTTTGTTAAGCAC
AAAAACTCTCTCGCATATGCCGCAAGCTAGCTTATTAGAAAGAGCTGACC
AAATCACCCTCCGATGATGATGATCTTGTTGCAATATTATTGTTTCCATT
GACCCTCCTGCAGTTCAATCTAATCTCCCCTTGATTTCCTGTCAGTGGTT
TCAAATTGCCCATTCTTATCATTGAGATCACAAAGTTTTTAAAGAAAGCA
GTCTGGTTCCTCCCAAAGTCCTCGACAATGGCAGCGGTATCGGCACCAGG
AGTCGAAAACAACTCTTGATCACTCTGCAGAAGGCCTTTGCGGAGTCTAA
GATTGGAGAAGTATTTGTTGTCGAAAGCATCAGGTGTTTTGACATCAAAA
TTAGCAAGAACGGCGCCGTTTCCACCCTGTGGGCATAGTTCCCTCAGTTG
CTTTAAGAGGGTTCTGTCCACTGTTGGGTCTGGCTTGCCAGTTTTGTTGA
AATCGTATAATCTGTCACTGAAAAATTTGCACTGAGCCCTTCCAAACGTG
TGAGCTCCGGAGAGTGCAACAAGATCAAACTTGTCATTGAGGCCAACATT
TCTA
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