CF835294

Overview
NameCF835294
Unique NameCF835294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.206e-24
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 2
Query:  113 IAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 400
            IA G   ++    +LKA +AEF S L+FVFAG GS +A++KLT G    PAGL++ ++ H F LFVAV++GANISGGHVNPAVTFG  +GG IT+L
Sbjct:    5 IAFGRFDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITIL 100          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.582e-24
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  122 GTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKL-----TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            G   EA+HPD+++A LAEF S  +FVFAG+GS +A  KL        G +TP GL+  +LAHA ALF AVS   N+SGGHVNPAVTF A +GG I+++R
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIR 110          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.816e-24
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 2
Query:  101 PIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            P  R  +G   +A+HPD ++A ++EF +  IFVFA +GS ++  KL     STP GL++ SLAHA AL VAV+V  NISGGHVNPA+TFGA +GG ++L+R
Sbjct:    8 PGRRFTVGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKLYQD-MSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIR 107          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.879e-23
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 2
Query:  113 IAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLL 400
            +A G+  ++    +L+A LAEF S L+FVFAG GS +A++KLT   A    GL++ ++ H FALFVAV++GANISGGHVNPAVTFG  VGG IT++
Sbjct:    4 VAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVI 99          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.641e-23
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  101 PIYRIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            P  R  +G   +A+HPD ++A ++EF +  IFVFA +GS ++  K+     ST  GL++ +LAHA AL VAV+V  NISGGHVNPAVTFGA VGG ++L+R
Sbjct:    7 PGRRFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHD-MSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVR 106          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  110 RIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGA--STPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            R  +G   +A+HPD ++A ++EF +  IFVFA +GS ++  K+    +  ST  GL++ +LAHA  L VAV+V  N+SGGHVNPAVTFGA VGG ++L+R
Sbjct:   12 RFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVR 111          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.570e-19
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 2
Query:  110 RIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            ++A+G   EA+ P  L+A +AE     +FVF+G GS MA +KL  GG  T  GL + + AHA  + V VS G ++SGGH+NPAVT G   GGHITL R
Sbjct:    3 KLALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKL-GGGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFR 99          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  110 RIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            + A+G   EAS    ++A LAE     +FVFAG GS MA  KL  GG  T  GL + +LAH   + V VS G ++SGGH+NPAVT G    G ITL R
Sbjct:    3 KFALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFR 100          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 46/98 (46.94%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  110 RIAIGTPGEASHPDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLR 403
            +I +G   EA+ PD +KA + EF +  +FVFAG GS MA   L     +T  GL + ++AHAF + V +S G +ISGGH+NPAVT G  +GGHI++ R
Sbjct:    3 KIELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLV---GNTLVGLFAVAVAHAFVVAVMISAG-HISGGHLNPAVTLGLLLGGHISVFR 96          
BLAST of CF835294 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  146 PDALKAGLAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITL 397
            P AL+A  AEFFS  +FVF   GS ++   LT    S  + L++ ++A AF LF AV + A++SGGHVNPAVTF   +GGHIT+
Sbjct:   14 PPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITV 97          
The following BLAST results are available for this feature:
BLAST of CF835294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TIP22_ORYSJ1.206e-2457.29Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP32_ARATH4.582e-2454.55Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP31_ORYSJ7.816e-2452.48Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP21_ARATH3.879e-2355.21Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP31_MAIZE8.641e-2351.49Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP32_MAIZE5.601e-2249.00Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP43_ORYSJ7.570e-1948.98Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE3.757e-1847.96Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIP41_ARATH1.093e-1746.94Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP51_ORYSJ1.578e-1650.00Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835294 ID=CF835294; Name=CF835294; organism=Citrus sinensis; type=EST; length=403bp
GCAATATAACCCCTATAGAAANACNGAGCCAGCAAGCTTGTAAGAAGCCT
TCCCTTCTAAAACAAAATCGTTTTTCTTGACAAAATTTTCGATAAAAATG
CCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAAGCCATCCTGA
TGCGTTAAAGGCGGGGCTAGCTGAGTTTTTCTCAATGCTTATTTTTGTTT
TCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAACGGATGGCGGG
GCGTCCACACCGGCCGGTCTTATATCTGCATCACTGGCTCATGCATTTGC
CCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTGGGGGTCACGTGA
ACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACATTACATTGTTG
AGG
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