CF835317

Overview
NameCF835317
Unique NameCF835317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:524..1372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPU (Chalcone synthase A OS=Ipomoea purpurea GN=CHSA PE=3 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 5.261e-72
Identity = 135/232 (58.19%), Postives = 167/232 (71.98%), Query Frame = -2
Query:  153 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            MMY QGC AG  +LRLAKDLAENNKG RVLVVCSE+    FRGP+    D+L+ Q LF           +P   +E PL++LVS +QT +PD+D  +   LRE+GLTFH  K VP LI++N+E  L +AF P GISDWNSIFWI HPGG AILD V           +A+R VLS+YGN++SACVLFILDE+RKKS ++ + TTGEGL+WGV+FGFGPGLT++TVV+ SVPI
Sbjct:  164 MMYQQGCNAGAAMLRLAKDLAENNKGGRVLVVCSEVMLSVFRGPSLQQEDNLLAQCLFGDGAAAVIVGTEPRPGLETPLFELVSAAQTTIPDTDSYLKLQLREMGLTFHCSKAVPSLITQNVEDCLVKAFEPFGISDWNSIFWILHPGGNAILDGVEEKLGLEPEKLRASRDVLSQYGNLTSACVLFILDEVRKKSKKDEQMTTGEGLEWGVVFGFGPGLTIDTVVIRSVPI 395          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: TBSYN_HYPAN (Trihydroxybenzophenone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.096e-67
Identity = 129/233 (55.36%), Postives = 160/233 (68.67%), Query Frame = -2
Query:  153 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDT-SVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            M+Y QGCFAGGT LR+AKDLAENN+GARVLVVC+E TA+TF  P ++HLD +VGQA+F            PD  S ER ++ ++S SQTI+P SDGAI  H  E+G+++ L +DV  L   NI   + EAF+P+G+SDWNS+F+  HPGG  I+D V            ATR VL EYGNM SACV+FILDE+RK S    K TTG+G ++G L G GPGLTVE VVL SVPI
Sbjct:  161 MLYNQGCFAGGTALRVAKDLAENNEGARVLVVCAENTAMTFHAPNESHLDVIVGQAMFSDGAAALIIGACPDVASGERAVFNILSASQTIVPGSDGAITAHFYEMGMSYFLKEDVIPLFRDNIAAVMEEAFSPLGVSDWNSLFYSIHPGGRGIIDGVAGNLGIKDENLVATRHVLGEYGNMGSACVMFILDELRKSSKVNGKPTTGDGKEFGCLIGLGPGLTVEAVVLQSVPI 393          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.037e-64
Identity = 118/154 (76.62%), Postives = 134/154 (87.01%), Query Frame = -2
Query:  387 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILD 848
            MMY QGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALF           DP   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI+K+L EAF P+GISD+NSIFWIAHPGGPAILD
Sbjct:  158 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILD 311          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: VPS_PSINU (Phloroisovalerophenone synthase OS=Psilotum nudum GN=VPS PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.273e-64
Identity = 122/238 (51.26%), Postives = 162/238 (68.07%), Query Frame = -2
Query:  147 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNI----EKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            M+Y QGCFAG TVLR+AKDLAENNKG+R+LVVCSE+T ++FRGP + H ++LVGQALF           DP    E   +++     +++PDSD A+ G+++E GL  HL K +P LI +NI    + +L E F     S +N +FW+ HPGGPAILD V            A+R++LS+YGNM S  VLF+LD MRK+S +E  +TTGEGL+WGV+ GFGPGLTVET++L SVP +A
Sbjct:  165 MVYQQGCFAGCTVLRIAKDLAENNKGSRILVVCSELTLISFRGPTEDHPENLVGQALFGDGAAALIVGADPIPHAENASFEIHWARSSVVPDSDDAVTGNIKENGLVLHLSKTIPDLIGQNIHTLLKDALEEMFDACNPSSFNDLFWVIHPGGPAILDAVEEELNLKSERTHASREILSQYGNMVSPGVLFVLDYMRKRSVDERLSTTGEGLEWGVMLGFGPGLTVETLILKSVPTQA 402          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPL (Chalcone synthase A (Fragment) OS=Ipomoea platensis GN=CHSA PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.803e-57
Identity = 114/199 (57.29%), Postives = 141/199 (70.85%), Query Frame = -2
Query:  252 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEE 848
            MMY QGC AG  +LRLAKDLAENNKGARVLVVCSE+T   FRGP+    D+L+ Q LF           DP   +E PL++LVS++QTI+PD+D  +  HL E+GLTFH  K VP LI++N+E  L +AF P GISDWNSIFWI HPGG AILD+V           +A+R VLSEYGN++SACVLFILD +R+KS ++
Sbjct:  162 MMYQQGCNAGAAMLRLAKDLAENNKGARVLVVCSEVTLSVFRGPSLQQEDNLLAQCLFGDGSAAVIVGTDPRPGLETPLFELVSSAQTIIPDTDSHLKLHLLEMGLTFHCSKAVPSLITQNVEDCLVKAFEPFGISDWNSIFWILHPGGNAILDRVEERLGLGPEKLRASRDVLSEYGNLTSACVLFILDLVRRKSKKQ 360          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTF (Chalcone synthase A (Fragment) OS=Ipomoea trifida GN=CHSA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.243e-57
Identity = 112/199 (56.28%), Postives = 142/199 (71.36%), Query Frame = -2
Query:  252 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEE 848
            MMY QGC AG  +LRL KDLAENNKGARVLVVCSEIT   FRGP+    D+L+ Q LF           DP   +E PL++LVS++QTI+P++D  +  HLRE+GLTFH  + VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V           +A+R VLSEYGN++SACVLFILDEMRKKS ++
Sbjct:  162 MMYQQGCNAGAAMLRLVKDLAENNKGARVLVVCSEITINIFRGPSLEQDDNLLAQCLFGDGSAAMIVGKDPRPGLETPLFELVSSAQTIVPNTDSHLKLHLREMGLTFHCSRAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRVEERLGLGPERLRASRDVLSEYGNLTSACVLFILDEMRKKSKKD 360          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTF (Chalcone synthase B (Fragment) OS=Ipomoea trifida GN=CHSB PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.047e-56
Identity = 110/199 (55.28%), Postives = 139/199 (69.85%), Query Frame = -2
Query:  252 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEE 848
            MMY QGC AG  +LRLAKDLAENNKGARVLVVCSE+    FRGP+    D+L+ Q LF           DP   +E PL++L+S +QTI+PD+D  +  H+RE+GLTFH  K VP  I++N+E  L +AF P GISDWNSIFW+ HPGG AI++ V           +A+R VLSEYGN++SACVLFILDE+RKKS ++
Sbjct:  166 MMYQQGCNAGAAMLRLAKDLAENNKGARVLVVCSEVMLSVFRGPSLQQEDNLLAQCLFGDGSAAIIIGTDPRPGLETPLFELISAAQTIIPDTDSHLKLHVREMGLTFHCSKAVPTFITQNVEDCLVKAFEPYGISDWNSIFWVLHPGGNAIVEGVEETLGLAPEKLRASRDVLSEYGNLTSACVLFILDEVRKKSKKD 364          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHSB_IPONI (Chalcone synthase B (Fragment) OS=Ipomoea nil GN=CHSB PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.015e-56
Identity = 110/199 (55.28%), Postives = 141/199 (70.85%), Query Frame = -2
Query:  252 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEE 848
            MMY QGC AG  +LRLAKDLAE+NKG RVLVVC+EIT   FRGP+    D+L+ Q LF           DP   +E PL++LVS++QTI+P++D  +  HLRE+GLTFH  K VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V           +A+R VLSEYGN++SACVLF LDEMRKKS ++
Sbjct:  164 MMYQQGCNAGAAMLRLAKDLAESNKGGRVLVVCAEITINIFRGPSLEQDDNLLAQCLFGDGAAAMIVAADPRPGLETPLFELVSSAQTIVPNTDSHLKLHLREMGLTFHCSKAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRVEERLGLGPEKFRASRDVLSEYGNLTSACVLFTLDEMRKKSKKD 362          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTR (Chalcone synthase A (Fragment) OS=Ipomoea triloba GN=CHSA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.177e-55
Identity = 111/199 (55.78%), Postives = 141/199 (70.85%), Query Frame = -2
Query:  252 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEE 848
            MMY QGC AG  +LRL KDLAENNKGARVLVVCSEIT   FRGP+    D+L+ Q LF           DP   +E PL++LVS++QTI+P++D  +   LRE+GLTFH  + VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V           +A+R VLSEYGN++SACVLFILDEMRKKS ++
Sbjct:  162 MMYQQGCNAGAAMLRLVKDLAENNKGARVLVVCSEITINIFRGPSLEQDDNLLAQCLFGDGSAAMIVGKDPRPGLETPLFELVSSAQTIVPNTDSHLKLTLREMGLTFHCSRAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGYAIVDRVEERLGLGPERLRASRDVLSEYGNLTSACVLFILDEMRKKSKKD 360          
BLAST of CF835317 vs. ExPASy Swiss-Prot
Match: CHSA_IPOCO (Chalcone synthase A (Fragment) OS=Ipomoea cordatotriloba GN=CHSA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.623e-55
Identity = 110/199 (55.28%), Postives = 140/199 (70.35%), Query Frame = -2
Query:  252 MMYXQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPVGISDWNSIFWIAHPGGPAILDQVXXXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSAEE 848
            MMY QGC AG  +LRL K LAENNKGARVLVVCS IT   FRGP+    D+L+ Q LF           DP   +E PL++LVS++QTI+P++D  +  HLRE+GLTFH  + VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V           +A+R VLSEYGN++SACVLFILDEMRKKS ++
Sbjct:  162 MMYQQGCNAGAAMLRLVKGLAENNKGARVLVVCSGITINIFRGPSLEQDDNLLAQCLFGDGSAAMIDGKDPRPGLETPLFELVSSAQTIVPNTDSHLKLHLREMGLTFHCSRAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRVEERSGLGPERLRASRDVLSEYGNLTSACVLFILDEMRKKSKKD 360          
The following BLAST results are available for this feature:
BLAST of CF835317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
CHSA_IPOPU5.261e-7258.19Chalcone synthase A OS=Ipomoea purpurea GN=CHSA PE... [more]
TBSYN_HYPAN5.096e-6755.36Trihydroxybenzophenone synthase OS=Hypericum andro... [more]
CHS4_TRISU4.037e-6476.62Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
VPS_PSINU5.273e-6451.26Phloroisovalerophenone synthase OS=Psilotum nudum ... [more]
CHSA_IPOPL2.803e-5757.29Chalcone synthase A (Fragment) OS=Ipomoea platensi... [more]
CHSA_IPOTF6.243e-5756.28Chalcone synthase A (Fragment) OS=Ipomoea trifida ... [more]
CHSB_IPOTF4.047e-5655.28Chalcone synthase B (Fragment) OS=Ipomoea trifida ... [more]
CHSB_IPONI9.015e-5655.28Chalcone synthase B (Fragment) OS=Ipomoea nil GN=C... [more]
CHSA_IPOTR1.177e-5555.78Chalcone synthase A (Fragment) OS=Ipomoea triloba ... [more]
CHSA_IPOCO2.623e-5555.28Chalcone synthase A (Fragment) OS=Ipomoea cordatot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835317 ID=CF835317; Name=CF835317; organism=Citrus sinensis; type=EST; length=849bp
TTTTGACGTCATCAGTGAAAAGGTACGATGCCTTAAATTCAATTGACAAA
ACTAAACCTTCACACGATCAACCAATAATTCAAGAGTGAAAGCATACAAC
ATAAAGTTACTGAACTACTAAACATACTGATGGAGTTCTCACTTCAAGCT
TTGATGGGGACACTGTGCAGCACAACGGTCTCGACGGTGAGCCCCGGCCC
GAACCCGAACAGCACACCCCAATCTAGCCCTTCGCCGGTGGTGGCTTTCG
CTTCCTCAGCAGACTTCTTTCTCATCTCGTCAAGGATGAACAGGACACAA
GCGCTTGACATGTTACCGTACTCACTCAACACTTGACGTGTGGCCTTCAG
CTTCTCCTCTTTGAGGCCGAGTTTAGACTCCACTTGGTCCAGAATTGCGG
GCCCACCGGGGTGAGCGATCCAGAATATCGAGTTCCAGTCGCTGATGCCA
ACCGGGGCGAACGCTTCCGACAGGCTTTTCTCTATATTCTTTGAGATCAA
GCCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCGACTTCGCGCAAGT
GTCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGTCTGCGAAGTCGAC
ACAAGCTGATACAACGGACGCTCGACCGACGTGTCAGGATCGGCACCCAC
GATCACAGCAGCAGCACCATCACCGAACAAAGCCTGGCCCACAAGAGAAT
CAAGATGAGTATCGGCAGGGCCGCGGAAAGTGACCGCCGTGATCTCCGAA
CAGACAACAAGAACGCGAGCGCCCTTGTTGTTCTCAGCCAAGTCTTTAGC
GAGGCGAAGAACAGTGCCGCCGGCGAAACATCCTTGNTGGTACATCATG
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