CF835323

Overview
NameCF835323
Unique NameCF835323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:177..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.265e-29
Identity = 88/220 (40.00%), Postives = 116/220 (52.73%), Query Frame = -1
Query:  199 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 819
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G V    +       G D  YPGG  FDPLG  +  P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI NL  H+ADP   +A  FA  F P
Sbjct:   52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAI-WA-----TQVVLMGFVEGYRVGGGPLGEGLDPLYPGGA-FDPLGL-ADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVP 263          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.652e-29
Identity = 78/192 (40.62%), Postives = 104/192 (54.17%), Query Frame = -1
Query:  232 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 783
            P +L G  PGD+G+D   L +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    +         D  YPGG  FDPLG  +  PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.157e-29
Identity = 79/192 (41.15%), Postives = 105/192 (54.69%), Query Frame = -1
Query:  232 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 783
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I         D  YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 253          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.680e-29
Identity = 78/192 (40.62%), Postives = 102/192 (53.12%), Query Frame = -1
Query:  232 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 783
            P +L G  P D+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + GI      W+ AG        L+Y  + + +    ++ I WA       ++  G V    +         D  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.806e-29
Identity = 84/259 (32.43%), Postives = 119/259 (45.95%), Query Frame = -1
Query:  202 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQS-------------------------------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTT-----------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 816
            +RPLW+PG+  P+WLDGSL GD+GFDP GLG   E L++++ S                                           E++H RWAML   G    E LT +      +W  AG++E    ++           TL  +E++ IG+ E +R                 N +L      YPGG +FDPLG  +  PEK  +L+  EIK+ RLAM+A +G   Q   TG GP++N   HL+DP H T+   F+
Sbjct:   54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGKFFDPLGLAA-DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.806e-29
Identity = 78/192 (40.62%), Postives = 105/192 (54.69%), Query Frame = -1
Query:  232 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 783
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + + +    ++ I WA       +I  G V    I         D  YPGG  FDPLG  +  PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HL+DP
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVVDPLYPGGS-FDPLGL-ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 252          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.277e-29
Identity = 79/200 (39.50%), Postives = 104/200 (52.00%), Query Frame = -1
Query:  232 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 783
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL  + G+      W  AG        L+Y  + +         ++  +++ +G  EG R A    P  V  DP+            YPGG  FDPLG     PE   EL+ KE KNGRLAM ++ G + Q I TG GP++NL  HL DP
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAG--GPLGVVVDPL------------YPGGS-FDPLGLAE-DPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDP 251          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 8.198e-29
Identity = 83/215 (38.60%), Postives = 108/215 (50.23%), Query Frame = -1
Query:  232 PNRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGELEYFTDTTTLF------------IVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 819
            P+R ++ P      S  PE+L+G + GD+G+DP GLG  PE        E++H RWAMLGAAG  IPE L K G    P   W+  G L    +T   F            + E++ +G AE  R                  N L   D  +PGG  FDPLG     PE+   L+ KEIKNGRLAM A++G + Q   TG GP++NL  HL+DP
Sbjct:   65 PDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYR----------------ITNGLDFEDKLHPGGP-FDPLGLAK-DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDP 261          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.398e-28
Identity = 81/216 (37.50%), Postives = 114/216 (52.78%), Query Frame = -1
Query:  289 AGTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-------LTGTDVGYPGGLWFDPL--------GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 861
            A  +  +V AAAA  +   W P          PEWLDGSLPGD+GFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   TL   ++I +GW E +RW D   P   + +   P +K        TG + GYPGG +FDPL        G      EK++ L+  EIK+ RLAMLA++  +F+
Sbjct:   39 ATPKRFTVLAAAAKKS---WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTG-EQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFE 243          
BLAST of CF835323 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.398e-28
Identity = 78/202 (38.61%), Postives = 105/202 (51.98%), Query Frame = -1
Query:  202 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 783
            P +L G  PGD+G+D  GL +DP T   N + E++HCRW MLGA G   PEL  + G+      W+ AG        L+Y  + + +    ++ I WA       ++  G V    +         D  YPGG  FDPLG  +  PE   EL  KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGS-FDPLGL-ADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 260          
The following BLAST results are available for this feature:
BLAST of CF835323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB215_PEA1.265e-2940.00Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB25_PETSP1.652e-2940.63Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_PEA2.157e-2941.15Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_PETSP3.680e-2940.63Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB4A_ARATH4.806e-2932.43Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB28_PEA4.806e-2940.63Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PETSP6.277e-2939.50Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB26_ARATH8.198e-2938.60Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB4A_SOLLC1.398e-2837.50Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB21_PETSP1.398e-2838.61Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835323 ID=CF835323; Name=CF835323; organism=Citrus sinensis; type=EST; length=921bp
TTTTTTTTTTTTTTTTTCCCCTGAATATTTTTTATATTCATGGCATCTAA
GTGATCACACAAGTCTTTGTACATAGATAGAGGCAATTAATACAAGTTCT
AATCATACAACCTTTCCCTAAGAGAAACACCAATTCCTTTGATCTCAAGC
TTCCACTTGGCCCAAATTTCTCTCCCTTTGTTCGTCATCATCTCACTTGG
GGGTGAAGGCAGCAAAAACGGTGGCATGACCAGGATCAGCAAGGTGAGCA
ATGAGATTGTCAATGGGGCCGGTGCCGGTGTAAATGTGCTGGAACCAAGC
ACCCATCACAGCCAACATAGCCAATCTTCCATTCTTGATCTCCTTAGTCC
TCAGCTCCTTTACCTTCTCGGGCGAACCGGATCCCCAGCCAAGTGGGTCA
AACCAAAGCCCACCTGGGTACCCAACATCGGTGCCGGTGAGCTTGTTGTT
GGGGAAGATCGGGTCAGTGTTCACACAGCCTGGCTTTATAATGTCGGCCC
ACCGTCTGCCCTCTGCCCAGCCTATGAATATCATCTCAACAATGAACAGG
GTGGTGGTGTCTGTGAAGTACTCTAGCTCCCCAGCTGTGTACCAGGATGG
AGTGTTGAGGATTCCAAGTTTTGTTAACAATTCCGGAATGAAAATTCCTG
CAGCTCCTAACATTGCCCATCTGCAGTGCACAATTTCTGATTGCACGTTC
CATCTCAGCGTCTCAGGATCAGATCCAAGACCAAGAGGATCGAAGCCGAA
GTCTCCGGGGAGGCTACCATCGAGCCATTCAGGAGGAGTGCTGCCTGGGA
ACCAGAGAGGCCTGTTAGGATCAGCTGCAGCCGCACTCACTGAAACCGAT
CGTGTTCCCGCTGTTGCTCCGTTTTTTCTCAATTTCAGCTTCTTCCCACC
AAGGAAAGAAGCCTTTGTTGC
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