CF835324
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.656e-28 Identity = 79/209 (37.80%), Postives = 111/209 (53.11%), Query Frame = 1 Query: 247 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-------LTGTDVGYPGGLWFDPL--------GWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 798 V+AAA P + W P PEWLDGSLPGDFGFDPLGLG DP L+W ++E++H RWAM GIF+ + + + W+ A G + F+ +L +++ +GW E +RW D + D P +K TG + GYPGG +FDPL G EK++ L+ EIK+ RLAMLA++ +F+ Sbjct: 44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTG-EQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFE 243
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.775e-28 Identity = 76/194 (39.18%), Postives = 102/194 (52.58%), Query Frame = 1 Query: 298 TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGELEYFTD-------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 +PP +L G PGD+G+D GL +DPET N + E++HCRWA+ G PELL + G+ W+ AG + F++ +L + I WA ++ G V + D Y GG FDPLG G PE+ EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL HL DP Sbjct: 63 SPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGS-QIFSEGGLSHPGNPSLVHAQSILAIWA-----CQVVLMGAVEGYHVAGGRLGEVVDPLYLGGS-FDPLGLGD-DPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDP 248
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.775e-28 Identity = 82/219 (37.44%), Postives = 111/219 (50.68%), Query Frame = 1 Query: 223 TAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSW-------YTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 TA T+ V D + L P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+ W ++ G L+Y + + + ++ I WA ++ G V + D YPGG FDPLG + E EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 38 TAATKKVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAI-WA-----CQVVLMGAVEGYRVAGGPLGEVVDPLYPGGS-FDPLGLADDA-EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.064e-27 Identity = 88/234 (37.61%), Postives = 121/234 (51.71%), Query Frame = 1 Query: 223 TAGTRSVSVSAAAAD---PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 T R +V AA + P+R + F + PE+L G PGD+G+D GL +DP+T + E++H RWA+LGA GI PELL++ G+ P W+ AG L Y + + + V+++ +G AE R A+ G L D YPGG FDPLG + P+ EL+ KEIKNGRLAM + +G + Q I TG GP+ NL HLADP Sbjct: 18 TRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-ANGGSEGF-----------LDDLDTLYPGGP-FDPLGL-ADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.064e-27 Identity = 78/204 (38.24%), Postives = 104/204 (50.98%), Query Frame = 1 Query: 304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK-LGI-LNTPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P +L+G PGD+G+D GL +DPE N E++H RWAMLGA G PE+L K +G+ P W+ AG L+Y + + +++ +G EG F N L G G YPGG +FDPLG + P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HL DP Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEG-----------------FRINGLDGVGEGNDLYPGGQYFDPLGL-ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDP 252
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.370e-27 Identity = 83/215 (38.60%), Postives = 109/215 (50.70%), Query Frame = 1 Query: 268 PNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLF--------IVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 PNR W + + P +L G PGD+G+D GL +DPET + + E++H RWAMLGA G PELL K G W+ AG L+Y + + + V++I +G EG R VN P G D YPG FDPLG + P+ EL+ KEIKNGRLA ++ G + Q I TG GP+ NL HLA+P Sbjct: 39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR---------VNGGPAG-----EGLDPLYPGES-FDPLGL-ADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 4.042e-27 Identity = 81/249 (32.53%), Postives = 114/249 (45.78%), Query Frame = 1 Query: 271 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQS-------------------------------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTT-----------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 +RPLW+PG+ P+WLDGSL GD+GFDP GLG E L++++ S E++H RWAML G E LT + +W AG++E ++ TL +E++ IG+ E +R N +L YPGG +FDPLG + PEK +L+ EIK+ RLAM+A +G Q TG GP++N HL+DP Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGKFFDPLGLAA-DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 278
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 4.042e-27 Identity = 76/204 (37.25%), Postives = 104/204 (50.98%), Query Frame = 1 Query: 304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN--TPSWYTAGE-------LEYFTDTTTLFI--------VEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVG---YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 P +L+G PGD+G+D GL +DPE N E++H RWAMLGA G PE+L K ++ P W+ AG L+Y + + +++ +G EG F N L G G YPGG +FDPLG + P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL+ HL +P Sbjct: 64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG-----------------FRINGLPGVGEGNDLYPGGQYFDPLGL-ADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNP 249
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 9.956e-26 Identity = 85/264 (32.20%), Postives = 117/264 (44.32%), Query Frame = 1 Query: 229 GTRSVSVSAA-AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQS-------------------------------------------EIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTT-----------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 GT+ S A +RPLWFPG+ PE+LDGSL GD+GFDP GLG E L++++ S E++H RWAML G E LT + +W AG++E ++ TL +E++ IG+ E +R N +L YPGG +FDPLG S P K +L+ EIK+ RLAM+ +G Q TG GP++N HL+DP Sbjct: 36 GTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGKFFDPLGLAS-DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDP 275
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.452e-24 Identity = 72/175 (41.14%), Postives = 94/175 (53.71%), Query Frame = 1 Query: 355 GLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855 GL +DPET N + E++H RWAMLGA G PELL + G+ W+ AG L+Y + + + ++ I WA +I G V I TD YPGG FDPLG PE + EL+ KE+KNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAI-WA-----TQVILMGAVEGYRIAGGPLGEVTDPIYPGGS-FDPLGLAD-DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 240 The following BLAST results are available for this feature:
BLAST of CF835324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835324 ID=CF835324; Name=CF835324; organism=Citrus sinensis; type=EST; length=860bpback to top |