CF835324

Overview
NameCF835324
Unique NameCF835324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:12..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.217e-23
Identity = 84/237 (35.44%), Postives = 116/237 (48.95%), Query Frame = 1
Query:  229 GTRSVSVSAAAADPNRPLWFPGSTP--------PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT-----KLGILNTPSWYTAGE-------LEYFTDTTTL--------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            G ++VS S+++A+     + P +T         P    G  PGD+G+D  GL +DPET +   + E++H R  +LGA G+  PELL      K G  +   W+ AG        L Y  + + +          V+++ +G  EG R         VN  P        G D  YPG   FDPLG     P+   EL+ KEIKNGRLAM A +G + Q I TG GPI+NL  HLA+P
Sbjct:   43 GAKAVSKSSSSANQ---FYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFG--DAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR---------VNGGPAGE-----GLDPLYPGEA-FDPLGLAD-DPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 77/244 (31.56%), Postives = 109/244 (44.67%), Query Frame = 1
Query:  265 DPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNV-------------------------------------------QSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDT-----------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL 834
            D +R +WFPG+ PPEWLDGS+ GD GFDP GLG   E L+++                                            + E++H RWAMLG  G    E LT +      +W  AG++E    +           TTL  +E++ +G+ E +R                 N++L      YPGG +FDPLG  +  PEK+  L+  EIK+ RLAM+A +    Q  +TG GP+  L
Sbjct:   53 DGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGI------AWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQR-----------------NSELDPEKRIYPGG-YFDPLGLAA-DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.819e-19
Identity = 70/193 (36.27%), Postives = 89/193 (46.11%), Query Frame = 1
Query:  280 LWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT-DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            +WFPG+ PP  L G  P D GFDPL + +DP        SE+ H R +ML   G  +PELL K       +W+  G      D   L  + M      E  R       G  N D         GT D  YPG   FDPL       +   +   +EIKNGRLAM  ++G  FQ++ TG  P+ NL AH A+P
Sbjct:  161 VWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVGNS---VDGIKLGFILMAIAAPTEYWRGN-----GGFNWDK--------GTADRSYPG---FDPL-------KLTTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANP 321          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.979e-18
Identity = 69/195 (35.38%), Postives = 93/195 (47.69%), Query Frame = 1
Query:  271 NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            + PLWFP +  P WL+G   GD GFDP GL +DP+T      +E+ H R AML   G  +P+ L K GI     WY A +         + + E+     A G    ++ +    N+DP         T + YPG   FDPL     + +  KE    EIKNGRLA+ A++G   Q    G  P+ NL  HL  P
Sbjct:    1 SHPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQ------NAGIGLKEVAIFTAAYGV--FEVARGVKENSDP---------TTI-YPG---FDPLNL---TTDYTKEA---EIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQP 162          

HSP 2 Score: 90.8929 bits (224), Expect = 9.979e-18
Identity = 68/206 (33.01%), Postives = 88/206 (42.72%), Query Frame = 1
Query:  220 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 837
            A   T     +++ A   R LWFP   PP +L G   GD GFDP GL +DP T      +E+ HCR +ML   G  +PEL      L   +W+   +   F     + +  +  + +  G                 F  N     D  YPG   FDPL     + E  KE    EIKNGRLAM  + G   Q   TG  PI+NLI
Sbjct:  353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPEL------LGNGAWFQIWDKVDFNRFAVVALQVVAPLEYWRGNGG--------------FLWNDEETVDQSYPG---FDPLNL---TTEYTKE---AEIKNGRLAMNGMFGLEVQSHVTGKSPINNLI 529          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.979e-18
Identity = 65/197 (32.99%), Postives = 95/197 (48.22%), Query Frame = 1
Query:  304 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHL 846
            P +L G  PGD+G+D  GL + PET   N + E++H R AM  A G   PELL+ +G       W+ AG        L+Y  + +         ++  ++I +G  EG R A    P    TDP++P +              FD LG    + E   EL+ KE+KNGRLAM ++ G + Q I +    ++NL  HL
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIAR--GPLGEVTDPLYPGS--------------FDSLGLAEDT-EAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.468e-17
Identity = 56/154 (36.36%), Postives = 75/154 (48.70%), Query Frame = 1
Query:  268 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 699
            P+RP +        P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PELL K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G V    +       G D  YPGG  FDPLG
Sbjct:   51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAI-WA-----CQVVLMGAVEGYRVGGGPLGEGLDQLYPGGA-FDPLG 197          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.797e-12
Identity = 53/142 (37.32%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  454 ELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            ELL K G+      W+ AG        L+Y  +   +    ++ I WA       ++  G +    +       G D  YPG   FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLADP
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI-WA-----CQVVLMGLIEGYRVGGGPLGEGLDPLYPGDA-FDPLGLAD-DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 134          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  667 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   40 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 100          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  667 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249          
BLAST of CF835324 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  667 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 855
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249          
The following BLAST results are available for this feature:
BLAST of CF835324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2_DUNSA1.217e-2335.44Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB4C_ARATH1.030e-2231.56Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
LH15_EUGGR1.819e-1936.27Light-harvesting complex I LH35 proteins (Fragment... [more]
LH18_EUGGR9.979e-1835.38Light-harvesting complex I LH38 proteins (Fragment... [more]
CB2_MALDO9.979e-1832.99Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_SILPR6.468e-1736.36Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_PINSY4.797e-1237.32Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB2D_SOLLC1.396e-1158.73Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.396e-1158.73Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.396e-1158.73Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835324 ID=CF835324; Name=CF835324; organism=Citrus sinensis; type=EST; length=860bp
CTTCTGTTCACTGCCTATTGTATTCTACTTTACACGCACACAAACGCCAG
TCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTT
GTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGT
AGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCT
GAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGA
GTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACT
CCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCC
TCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAG
AAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATT
CCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACAC
AGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTG
AGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATA
AAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCAC
CGGCACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTGACCCACTTGGCT
GGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGGACTAAGGAGATC
AAGAATGGAAGATTGGCTATGTTGGCTGTGATGGGTGCTTGGTTCCAGCA
CATTTACACCGGCACCGGCCCCATTGACAATCTCATTGCTCACCTTGCTG
ATCCTGGTCA
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