CF835329

Overview
NameCF835329
Unique NameCF835329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++T KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD D+ALIIF++  +LF+Y+SS M  +L K+  +S+
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASSDMDRVLLKYTEYSE 74          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI++I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF+ + KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI++I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF+ + KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI++I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF+ + KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI++I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF+ + KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 54/144 (37.50%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS---SSMKEILEKHR--VHSKNLERVDQP-SVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRV 613
            M R + +IK+I+N T RQ TF KRR G+FKKA EL+VLCDAD+ L++FSA+GKL+ + S    S++E +E++    H+K    + Q    EL+ +  +   +L K+       LR M  ++    ++  L+ LE +LE  + +V
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELEKV-GSMCDLLEKQ-------LRFMTVDDGEEYTVPSLEALEHNLEAAMRKV 136          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 47/150 (31.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  278 GIFKKAEELSVLCDADVALIIFSATGKLFEYSSS--SMKEILEKHRVHSKNLERV-DQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            G+ KKA EL++LCDA + +IIFS++GK+FE+SS   SM+EI+++++  S N   V D   V  ++    N      E  +    +R   GE++  L++ E+ +LE+ LE+ + +V            + L+R+  +L E+N  L + + +
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCAPVYDNQQVYCEITRMKN------EIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQD 145          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF+++ KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 38/74 (51.35%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF+++ KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74          
The following BLAST results are available for this feature:
BLAST of CF835329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
MEF2C_BOVIN4.633e-1552.70Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2B_MOUSE6.051e-1554.05Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
MEF2D_XENLA1.032e-1451.35Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT1.032e-1451.35Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE1.032e-1451.35Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN1.032e-1451.35Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MAD32_ORYSJ1.032e-1437.50MADS-box transcription factor 32 OS=Oryza sativa s... [more]
AP32_ASAEU1.032e-1431.33MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MEF2A_XENLA1.348e-1451.35Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT1.348e-1451.35Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835329 ID=CF835329; Name=CF835329; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTCCTTTTTTTAATCTCTTTTCCTTCTCCCATATTCTCTCGT
CTCTCTCTATCGCTCATTGGTGGCATTTTCAAAGTCTCCATTCCGAAGTT
TTAAACTCTCCCACAAAACCAAACCACATTACCAGCCGATCTCCATAAGC
CAAATTGGGAAGATCACAGCAGTAACAGCTAGCAAGCAAGGGCAAAGAGA
TGGCGAGAGAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGG
CAAGTCACTTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGA
GCTTTCTGTTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCA
CAGGCAAGCTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAA
AAGCACCGTGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGT
TGAGTTGCAGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAG
CTGCTGAAAAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCAT
GGATTAAGTTTAGAAGAATTGCAGAAGCTTGAAAGGTCTCTTGAAGTTGG
ATTGGGACGAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTA
ATGAACTCCAAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTA
AGACAGCAAGTGGCGGAGGTATCAAATGCATA
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