CF835329

Overview
NameCF835329
Unique NameCF835329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 69/175 (39.43%), Postives = 104/175 (59.43%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMR---GEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQV 712
            M R ++++K+++N   RQVTF+KRR G+ KKA ELSVLCDA+VALI+FS  GKL+E+ S+SSM + LE+++  +      +  S E  +LE ++     K  A    L R  R   GE++  LS ++L+ LER L+  L ++             +LQR+  LL E N  LRQ++
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRM 175          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 63/170 (37.06%), Postives = 110/170 (64.71%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS-SMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFK-EAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLR 703
            M R + ++K+I+N T+RQVTFSKRR G+ KKA ELSVLCDA+VALI+FS  G+L+E++S+ S+++ +++++ ++K+         ++Q ++++   +  K EA ++S   R++ GE + G S+EEL+ LE  LE  L  +             +L+ + + L+++NE LR
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESR--RKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLR 168          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.437e-24
Identity = 70/179 (39.11%), Postives = 113/179 (63.13%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHRVHS-KNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMR---GEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEV 721
            M R ++++K+I+N   RQVTF+KRR G+ KKA ELSVLCDA+VALIIFS  GKL+E+ SSS+M + L++++  S  ++E  ++P+ EL+    N+Y    K      +L RQ R   GE++  L+ +EL++LER L+  L +V            ++LQ + ++L+E N  L  ++ ++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELE----NSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDM 175          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.437e-24
Identity = 67/180 (37.22%), Postives = 107/180 (59.44%), Query Frame = 2
Query:  182 ASKGKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKH-RVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            +S  ++  R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VALI+FS+ G+L+EYS++S+K  +E++ +  S N        +  Q  +  + + L ++     +  RQ+ GE I  +S +EL+ LE  L+  + R+            + +Q+R   L  +N+ LR ++AE
Sbjct:   11 SSPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQES-AKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAE 189          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.437e-24
Identity = 64/175 (36.57%), Postives = 104/175 (59.43%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY--SSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R K+++K+I+N   RQVTF+KRR G+ KKA ELSVLCDA++AL+IFS  GKL+E+  S S M   ++K+R HS      +Q + +LQ  +  +Y  L        H  R + GEE+  + + EL+ LER ++  L ++            ++L+ + ++L+E N  LR+++ +
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQ-DKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLED 174          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 67/176 (38.07%), Postives = 103/176 (58.52%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHRVHSKNLERVDQPSVELQLLEN--NNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R ++++K+I+N   RQVTF+KRR G+ KKA ELSVLCDA+VALIIFS  GKL+E+ S  SM   LE+++  S         + E +L+++  N Y  L           R + GE++  L ++EL++LE+ L+  L  +             +LQRR ++L E N+ LR+++ E
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEE 176          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 63/172 (36.63%), Postives = 101/172 (58.72%), Query Frame = 2
Query:  203 AREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            +R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VAL++FS+ G+L+EYS++S+KE +E+++  + +       +           + L ++     +  R + G+ I  ++  EL++LE  L+ GLG++              +QRR   L  +N  L+ +VAE
Sbjct:   44 SRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAE 215          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 66/171 (38.60%), Postives = 104/171 (60.82%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLE-NNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQ 709
            M R K Q+K+I+N T+RQVTFSKRR G+ KKA ELSVLCDA+VALI+FS  GKL+E++S+S ++ +E++R ++K  E +   +V+  + +   +   L K+        R++ GE++   S+EEL  LE  LE  L  +             +L+ +   L ++NE LR++
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTK--ENIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREK 169          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 66/175 (37.71%), Postives = 105/175 (60.00%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFK-EAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            M R ++++K+I+N   RQVTF+KRR G+ KKA ELSVLCDA+VALI+FS  GKL+E+ S+S M + LE+++  S       QPS E +        +  K +  ++SH  R + GE++  LS +EL++LE  L+  L ++             +LQ++ ++L E N  L+ ++ E
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSH--RNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE 173          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 62/182 (34.07%), Postives = 101/182 (55.49%), Query Frame = 2
Query:  185 SKGKEMAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730
            S  +++ R KI+IK+I+N T RQVTF KRR G+ KKA ELSVLCDA+VALI+FS+ G+L+EY+++S+K  +E+++    +       +           S L  +     +  R   GE +  L+L +L+ LE+ +E G+ ++              +Q+R   L   N+ LR ++AE   +
Sbjct:   12 SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERS 193          
The following BLAST results are available for this feature:
BLAST of CF835329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
MTF1_PEA8.424e-2539.43MADS-box transcription factor 1 OS=Pisum sativum G... [more]
MAD56_ORYSI8.424e-2537.06MADS-box transcription factor 56 OS=Oryza sativa s... [more]
SEP1_ARATH1.437e-2439.11Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
AG_BRANA1.437e-2437.22Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AGL3_ARATH1.437e-2436.57Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MADS8_ORYSJ1.877e-2438.07MADS-box transcription factor 8 OS=Oryza sativa su... [more]
MAD58_ORYSJ1.877e-2436.63MADS-box transcription factor 58 OS=Oryza sativa s... [more]
MAD50_ORYSJ1.877e-2438.60MADS-box transcription factor 50 OS=Oryza sativa s... [more]
CMB1_DIACA1.877e-2437.71MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
AG_PETHY1.877e-2434.07Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835329 ID=CF835329; Name=CF835329; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTCCTTTTTTTAATCTCTTTTCCTTCTCCCATATTCTCTCGT
CTCTCTCTATCGCTCATTGGTGGCATTTTCAAAGTCTCCATTCCGAAGTT
TTAAACTCTCCCACAAAACCAAACCACATTACCAGCCGATCTCCATAAGC
CAAATTGGGAAGATCACAGCAGTAACAGCTAGCAAGCAAGGGCAAAGAGA
TGGCGAGAGAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGG
CAAGTCACTTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGA
GCTTTCTGTTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCA
CAGGCAAGCTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAA
AAGCACCGTGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGT
TGAGTTGCAGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAG
CTGCTGAAAAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCAT
GGATTAAGTTTAGAAGAATTGCAGAAGCTTGAAAGGTCTCTTGAAGTTGG
ATTGGGACGAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTA
ATGAACTCCAAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTA
AGACAGCAAGTGGCGGAGGTATCAAATGCATA
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