CF835329

Overview
NameCF835329
Unique NameCF835329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 67/180 (37.22%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEY-SSSSMKEILEKHRVHSKNLERVDQPSVE----LQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVS 724
            M R ++++K+I+    RQVTF+KRR G+ KKA ELSVLCDA+VALIIFS  GKL+E+ SSSSM + LE+++   K      +P++     L++     Y  L           R + GE++  L+ +EL+ LER L++ L ++             + QR+   L E N  L+Q++ E S
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ---KCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGS 177          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 62/171 (36.26%), Postives = 97/171 (56.73%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS--SMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQ 706
            M R KI++K+I+N T+RQVTFSKRR G+ KK  ELSVLCDA + LIIFS+ GKLFEY S   SM +I+ ++   +     V+   V+L     +  + + ++       L++ +G+++     EEL +LE+ LE  L ++              L++  K+L +EN  + Q
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQLY----DEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQ 170          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 62/178 (34.83%), Postives = 109/178 (61.24%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEK-HRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730
            M R KI+IK+I+N++ RQVT+SKRR GI KKA+E+SVLCDA V++IIF+++GK+ E+SS+S+ +IL++ H++  + L      +++      N  + + K+       LR ++GE+I  L+  EL  LE +L+ GL  +              ++++ + + EE ++L  Q+ ++  A
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLWDAKHENLD------NEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSI----RNKQNDLLRMMRKKTQSMEEEQDQLNWQLRQLEIA 168          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 63/178 (35.39%), Postives = 109/178 (61.24%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEK-HRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730
            M R KI+IK+I+N++ RQVT+SKRR GI KKA+E+SVLCDA V++IIF+++GK+ E+SS+S+ +IL++ H++  + L      +++      N  + + K+       LR ++GE+I  L+  EL  LE +LE GL  +              ++++ + + EE ++L  Q+ ++  A
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLLDAKHENLD------NEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSI----RNKQNEVLRMMRKKTQSMEEEQDQLNCQLRQLEIA 168          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.942e-21
Identity = 62/173 (35.84%), Postives = 104/173 (60.12%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS-SSMKEILEKH-RVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQV 712
            M R+K++IK+I+N ++RQVTFSKRR G+ +KA +LSVLCDA VAL++ SA+GKL+ +SS  ++ +IL+++ + H+ +L+ +D  S  L     ++Y +L  E  +      ++ G  +  +S++ L +LE  LE  L                 L+ + K+L EEN+ L  Q+
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDLKALDHQSKALNY--GSHYELL--ELVDS-----KLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEENQVLASQM 164          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 65/176 (36.93%), Postives = 102/176 (57.95%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS--MKEILEKHRV---HSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQV 712
            M R KI+IK+I+NAT RQVT+SKRR GI KKA EL+VLCDA VA+I+FS+TGK  E+ S S  +K I ++++     S  +E+ +     L  L++ N ++  +        +RQ  GE++ GL  +EL+ LE++++  L  V               +++ K   E  E L+Q++
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTE--------IRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETLQQEL 168          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 64/183 (34.97%), Postives = 102/183 (55.74%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHR-------VHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSN 727
            M R ++++K+I+N   RQVTFSKRR G+ KKA ELSVLCDA+VALIIFS+ GKL+E+ S  ++  +E++         ++K  E       E+  L++   S++           R + GE++  + ++ELQ LER LE  L                  QR+ +++MEE E LR++  ++ +
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLV--------RTNRNLLGEDLGEMGVKELQALERQLEAALTATR--------------QRKTQVMMEEMEDLRKKERQLGD 161          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.644e-20
Identity = 68/187 (36.36%), Postives = 108/187 (57.75%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMK--EILEKH-RVHSKNL--ERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERL-----RQQVAEVSNA 730
            M R KI+IK+I+NA  R VTFSKRR G+ KKA+E++VLCDA VALIIF++ GK+ +Y   SM    +L+++ ++  K L   + +  S E+  ++  N S+  +        LR ++GE+I  L+L+ L  +E ++E GL +V               +R  K++ EE  +L     +Q++A  SNA
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIKKENDSLQLE--------LRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILI----SKRRNEKMMAEEQRQLTFQLQQQEMAIASNA 175          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.644e-20
Identity = 67/189 (35.45%), Postives = 104/189 (55.03%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSS-------MKEILEKHRVHSKNL---ERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENE----RLRQQVAEVS 724
            M R KI+IK+I+N+T RQVTFSKRR GI KKA E+ VLCDA+V ++IFS+ GKL +Y +         +  ILEK++ +S  +   E+    S E+  ++  N +M  +        LR M+GE+++ L  +EL  +E +L  G   +               +R  K+L +E++    R+ QQ  E+S
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIE--------LRHMKGEDLNSLQPKELIAIEEALNNGQANLRDKMMDHWRMH----KRNEKMLEDEHKMLAFRVHQQEVELS 177          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 62/176 (35.23%), Postives = 99/176 (56.25%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS--SMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSH-------LLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERL 700
            M R KI++K+I+N T+RQVTFSKRR G+ KK  ELSVLCDA + LI+FS  GKL EY +   SMK+I++++ V +K +     P +E +   + +   + KE              L++ +G+++  +  EEL +LE+ L+  L +V              L+R   +L +EN+ +
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRY-VKAKGI----LPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEM 171          
The following BLAST results are available for this feature:
BLAST of CF835329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AGL9_SOLLC1.756e-2237.22Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
FBP24_PETHY3.913e-2236.26MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
GLOB_TOBAC1.139e-2134.83Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY1.139e-2135.39Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
FLC_ARATH1.942e-2135.84MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MAD16_ORYSJ1.259e-2036.93MADS-box transcription factor 16 OS=Oryza sativa s... [more]
AGL6_ARATH1.259e-2034.97Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
PIST_ARATH1.644e-2036.36Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MADS4_ORYSJ1.644e-2035.45MADS-box transcription factor 4 OS=Oryza sativa su... [more]
DEF21_ANTMA2.147e-2035.23MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835329 ID=CF835329; Name=CF835329; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTCCTTTTTTTAATCTCTTTTCCTTCTCCCATATTCTCTCGT
CTCTCTCTATCGCTCATTGGTGGCATTTTCAAAGTCTCCATTCCGAAGTT
TTAAACTCTCCCACAAAACCAAACCACATTACCAGCCGATCTCCATAAGC
CAAATTGGGAAGATCACAGCAGTAACAGCTAGCAAGCAAGGGCAAAGAGA
TGGCGAGAGAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGG
CAAGTCACTTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGA
GCTTTCTGTTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCA
CAGGCAAGCTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAA
AAGCACCGTGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGT
TGAGTTGCAGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAG
CTGCTGAAAAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCAT
GGATTAAGTTTAGAAGAATTGCAGAAGCTTGAAAGGTCTCTTGAAGTTGG
ATTGGGACGAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTA
ATGAACTCCAAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTA
AGACAGCAAGTGGCGGAGGTATCAAATGCATA
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