CF835329

Overview
NameCF835329
Unique NameCF835329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 62/181 (34.25%), Postives = 105/181 (58.01%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSS-SMKEILEKHRVHSKNL------ERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIH-GLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAE 718
            MAR K+Q+++I+N   RQVTF KRR G+ KKA ELS+LC+AD+ +IIFSA GKL++ +++ +M+E++E+++  S         +R+D P  E  +L+    ++L K        LR + G   +  +++EEL  LER LE+ +  +              L+ +  +L   NE L++++ E
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMD-PKQEAMVLK-QEINLLQKG-------LRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVE 172          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLE 595
            M R K++I+KI+N T RQVTFSKRR GI KKA+EL+VLCDA V+L++ S+T KL  Y S  +   L+K     + +E VD    + + ++  +  +L   +  +  + R+M G ++ GL+L EL  L++ +E
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVS--LKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRM-GGDLEGLTLVELSALQQEME 129          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 60/185 (32.43%), Postives = 98/185 (52.97%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS-SSMKEILEKH-------RVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLGRVXXXXXXXXXXXXNELQRRGKLLMEENERLRQQVAEVSNA 730
            MAR KIQ+K+I+N   RQVTF KRR G+ KKA+ELSVLCDA++ ++IFS  GKLFE ++  +M+ +++K+       R  S       +      L   +  ++L +E       +  M G     ++LEEL  LE+ LE  + ++              L+ +  +L   N+ L +++ E +N+
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEENNNS 185          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 56/143 (39.16%), Postives = 87/143 (60.84%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSS--SSMKEILEKHR------VHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGL 604
            MAR KIQIK+I+N T RQVT+SKRR G+FKKA ELSVLCDA V++I+ S+T KL EY S  ++ K++ ++++      + S + E++ +   +L  +  N    L +E       +RQ  GE ++ L  E++  L   ++  L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRN----LRRE-------IRQRMGESLNDLGYEQIVNLIEDMDNSL 132          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 49/136 (36.03%), Postives = 80/136 (58.82%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKSHLLRQMRGEEIHGLSLEELQKLERSLEVGLG 607
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIFS++ KL++Y+S+ M  +L K+  +++  E +   ++  +  EN N  M       ++      R E  +    EE Q + +  ++ +G
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKYTEYNEPHESLTNKNIIEK--ENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEFQNMMQRNQMAIG 134          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSKNLERVDQPSVELQLLENNNYSMLFKEAAEKS 514
            M R KI I+KI N   RQ TF+KR+ G+ KKA ELS+LCD ++A+I+FS+  KLF+YSS  M ++L ++  ++ N  +          L N +Y+ +F     K+
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRYTDNTDNTRK---------NLTNQDYNRVFGNKKSKN 98          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++T KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++T KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++T KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of CF835329 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  200 MAREKIQIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDADVALIIFSATGKLFEYSSSSMKEILEKHRVHSK 421
            M R+KIQI +I +   RQVTF+KR+ G+ KKA ELSVLCD ++ALIIF++T KLF+Y+S+ M ++L K+  +++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74          
The following BLAST results are available for this feature:
BLAST of CF835329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
MAD26_ORYSI1.178e-1834.25MADS-box transcription factor 26 OS=Oryza sativa s... [more]
CMB2_DIACA9.974e-1840.15MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AGL12_ARATH1.303e-1732.43Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
DEFA_ANTMA4.950e-1739.16Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MEF2_DROME1.219e-1536.03Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
SRFC_DICDI2.716e-1540.00Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2C_PONAB4.633e-1552.70Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_PIG4.633e-1552.70Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2C_MOUSE4.633e-1552.70Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN4.633e-1552.70Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01A22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835329 ID=CF835329; Name=CF835329; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTCCTTTTTTTAATCTCTTTTCCTTCTCCCATATTCTCTCGT
CTCTCTCTATCGCTCATTGGTGGCATTTTCAAAGTCTCCATTCCGAAGTT
TTAAACTCTCCCACAAAACCAAACCACATTACCAGCCGATCTCCATAAGC
CAAATTGGGAAGATCACAGCAGTAACAGCTAGCAAGCAAGGGCAAAGAGA
TGGCGAGAGAAAAGATTCAGATCAAGAAAATTGACAACGCAACGGCGAGG
CAAGTCACTTTCTCTAAGAGACGAAGAGGGATTTTCAAGAAAGCTGAAGA
GCTTTCTGTTCTTTGCGATGCCGATGTTGCTCTGATCATCTTCTCCGCCA
CAGGCAAGCTCTTCGAATATTCCAGCTCAAGCATGAAGGAAATCTTAGAA
AAGCACCGTGTGCACTCAAAGAACCTTGAGAGGGTGGATCAACCATCTGT
TGAGTTGCAGCTGTTGGAGAACAACAACTACTCCATGTTGTTCAAGGAAG
CTGCTGAAAAAAGCCATCTGCTGAGGCAAATGAGAGGTGAGGAGATCCAT
GGATTAAGTTTAGAAGAATTGCAGAAGCTTGAAAGGTCTCTTGAAGTTGG
ATTGGGACGAGTGATAGAAAAGAAGGAAGAAAAGATTACAAAGGAGATTA
ATGAACTCCAAAGAAGGGGAAAGTTATTGATGGAGGAGAATGAGCGATTA
AGACAGCAAGTGGCGGAGGTATCAAATGCATA
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