CF835342

Overview
NameCF835342
Unique NameCF835342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835342 vs. ExPASy Swiss-Prot
Match: RBM34_MOUSE (RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 2 
Query:  248 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 541
            ++A+  AS+   D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   DAV  AL+LN SEL GR+L+V+ +  N   +KQ
Sbjct:  280 DLASETASR---DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 374
The following BLAST results are available for this feature:
BLAST of CF835342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RBM34_MOUSE5.383e-1141.41RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835342 ID=CF835342; Name=CF835342; organism=Citrus sinensis; type=EST; length=737bp
CCGGAATACAGCACGATAGAGAATGGAGGAAGAAGAGCACGAGGTTTACG
GAGGCGAAATCCCTGACGTGGAAGGTGACATGGACGCTCACAATACTGAC
GTCGACATGTCGGCGGCCGATGACGACGCCGTCAAGGAGCTGGATGAGAT
GAAGAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGTGAGA
TGCAAGCTAAGGTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTGCTAAT
GTGGCTGCTAATCAAGCAAGCAAAGAAGAGGCAGATTCACGATCAGTCTT
TGTTGGCAATGTAGATTATGCATGCACTCCTGAAGAAGTGCAGCAACATT
TCCAATCCTGTGGTACTGTAAACAGGGTAACTATTCTGACAGACAAGTTT
GGCCAGCCAAAGGGTTTTGCTTATGTGGAATTCCTTGAAATAGATGCTGT
TCAAGAGGCTCTCCAGTTGAATGAGTCTGAATTACATGGCCGTCAACTGA
AGGTTTTACCTAAGAGGACAAATGTCCCTGGTATGAAGCAGTATCGTCCA
AGGCGTTTCAATCCTTACATGGGGTACCGAGGCAGGAGGCCCTATGTACC
TCCTTATTTCTATTCACCTTATGGATATGGGAAGGTTCCGAGGTTCAGAA
GGCCAATGAGGTACATGCCCTACTACTAGCAGATTGTGCTCCTGTTGAAG
ATGGTGACATTTGTGGATCATCCATAAACTGAAAAAT
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