CF835348

Overview
NameCF835348
Unique NameCF835348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4842 contig Csv1_Contig4842:99..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835348 vs. ExPASy Swiss-Prot
Match: SF13A_HUMAN (Splicing factor, arginine/serine-rich 13A OS=Homo sapiens GN=SFRS13A PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 3 
Query:    6 MSHYGKSGPPDIRDTSSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA---KYGPNAEKIQQGRIV 326
            MS Y +  PP+    +SL V N+   T ++DL   F +YG +VDV++P D  T   RGFA+V+++   +A+ A+  LD + + GR+I +QFA   +  PN  K ++GR V
Sbjct:    1 MSRYLR--PPN----TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
The following BLAST results are available for this feature:
BLAST of CF835348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SF13A_HUMAN5.383e-1138.18Splicing factor, arginine/serine-rich 13A OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835348 ID=CF835348; Name=CF835348; organism=Citrus sinensis; type=EST; length=739bp
AAAAGATGTCCCATTACGGCAAATCAGGACCCCCGGATATCAGAGACACT
TCCTCTCTCCTCGTCCTCAACATCACTTTCCGCACCACCGCAGATGATCT
CTTCCCTCTATTCGAAAAGTACGGGAAGGTCGTCGATGTCTTCATCCCTC
GCGACCGAAGGACTGGTGATTCGCGAGGTTTTGCTTTTGTTCGATACAAG
TATGCGGATGAGGCGCAAAAGGCTGTGGACAGGCTTGATGGGAGAGTTGT
GGATGGAAGAGAAATTACAGTTCAGTTCGCCAAGTACGGTCCCAATGCAG
AGAAAATTCAACAAGGAAGGATAGTGGAATCATCTTCAAAGTCAAAAGGC
AGGTCTAGAAGTCGCAGTCCTCGTCCAAGGTATAGGGATGAACACAGGGA
CAAGGATTACAGGAGGAGAAGTCGCAGTAGAAGCAGGGAAAGATATGATC
GTGACAGGTACCGCAGCAAGGAAAGAGATCATCGTCGCCGAAGCCGGAGC
CGCAGTGCCAGTCCTGATCGTCACAAAAACCATGGGAGAGGCAAATACGA
TGAAGAGCGCCGCAGTAGGAGCCGATCTTACGAAAGTGCCTCCCCCCCTC
GGCATAGTCCCAATTCTAAAAGGAGCCCATCTCCACGTAAGACTCATAAG
GGTGAAATCAACCCTGATGAACGTTCTCCTGCTCTCAAACGTGTTTCACC
AGATGGTCGGCGATCTGTTTCTCGAAGTCTATCTCCACG
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