CF835350

Overview
NameCF835350
Unique NameCF835350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.278e-48
Identity = 83/118 (70.34%), Postives = 106/118 (89.83%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            MENFPII L K+NG ER+ATMEMI DACENWGFFELVNHGI  E++DTV+++TK HY KCM+QRFK++VASK LE VQ+EV D+DWESTFFL+HLP+SN++E+PDL+++YR+ M++FA
Sbjct:    1 MENFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFA 118          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.302e-48
Identity = 81/118 (68.64%), Postives = 107/118 (90.68%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            ME+FP+I++ K+NG+ER+ATM +INDACENWGFFELVNHGI  EL+DTV+R+TK HY KCM+QRFK++VASK LE +Q+EV D+DWEST+FLRHLP SN++E+PDL+++YR+ MK+FA
Sbjct:    1 MESFPVINMEKMNGEERAATMGLINDACENWGFFELVNHGIPPELMDTVERVTKAHYKKCMEQRFKELVASKALEGIQAEVTDMDWESTYFLRHLPQSNISEVPDLDEEYRRVMKDFA 118          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.302e-48
Identity = 85/117 (72.65%), Postives = 103/117 (88.03%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEF 581
            MENFPII+L KLNG ER ATME INDACENWGFFELVNHGI HE++DTV++LTK HY KCM+QRFK++VA KGLE V+ EV D+DWESTFFLRHLP SN++++PDL+D YR+ M++F
Sbjct:    1 MENFPIINLEKLNGAERVATMEKINDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVAKKGLEGVEVEVTDMDWESTFFLRHLPSSNISQLPDLDDVYREVMRDF 117          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.537e-48
Identity = 82/116 (70.69%), Postives = 105/116 (90.52%), Query Frame = 3
Query:  237 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            +FP+I+++ LNG+ R + +  INDACENWGFFELVNHGISHEL+D V++LTKEHY KCM+QRFK+MVASKGL++V++E+ND DWESTFFLRHLPVSNM+EI DL+++Y+K MKEFA
Sbjct:    4 DFPVINMNNLNGESRVSVLNQINDACENWGFFELVNHGISHELMDKVEKLTKEHYRKCMEQRFKEMVASKGLDSVETEINDTDWESTFFLRHLPVSNMSEIGDLDEEYKKVMKEFA 119          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.377e-46
Identity = 80/118 (67.80%), Postives = 106/118 (89.83%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            ME+FPII+L KLNG+ER+ TME I DACENWGFFE VNHGIS ELLD V+++TKEHY KCM++RFK+ + ++GL++++SEVND+DWESTF+L+HLPVSN++++PDL+DDYR  MK+FA
Sbjct:    1 MESFPIINLEKLNGEERAITMEKIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEERFKESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISDVPDLDDDYRTLMKDFA 118          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.872e-44
Identity = 80/118 (67.80%), Postives = 102/118 (86.44%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            M++FP+I++ KL G ER+ATM++INDACENWGFFELVNH I  EL+D V+RLTKEHY KCM+QRFK+++ASK +E    + ND+DWESTFF+RHLPVSN++EIPDL D++RK MKEFA
Sbjct:    1 MDSFPVINMEKLEGQERAATMKLINDACENWGFFELVNHSIPVELMDEVERLTKEHYKKCMEQRFKELMASK-VEGAVVDANDMDWESTFFIRHLPVSNLSEIPDLTDEHRKVMKEFA 117          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.576e-42
Identity = 75/118 (63.56%), Postives = 98/118 (83.05%), Query Frame = 3
Query:  231 MENFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            M  FPII+L  +N D R+  +E I DAC+NWGFFELVNHGI HE LD V+++T++HY KCM++RFK+ V SKGLEA Q+EVND+DWESTFFLRHLP SN++++ DL+++Y+K MKEFA
Sbjct:    1 MAVFPIINLENINDDGRAKILEQIEDACQNWGFFELVNHGIPHEFLDMVEKMTRDHYKKCMEERFKETVLSKGLEAAQAEVNDMDWESTFFLRHLPESNISQMSDLDEEYKKIMKEFA 118          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.275e-41
Identity = 78/138 (56.52%), Postives = 99/138 (71.74%), Query Frame = 3
Query:  237 NFPIIDLSKLN---GDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFAVXXXXXXXXXXXXXXXNLG 641
            NFPIID+ KLN   G ERS  ++ I DAC NWGFF++VNH +SHEL+D V+R+TKEHY K  +Q+FK MV +KGL + +S+VND+DWESTF+LRH P SN++E+PDL+D YRK MKEFA                NLG
Sbjct:    6 NFPIIDMEKLNNYNGVERSLVLDQIKDACHNWGFFQVVNHSLSHELMDKVERMTKEHYKKFREQKFKDMVQTKGLVSAESQVNDIDWESTFYLRHRPTSNISEVPDLDDQYRKLMKEFAAQIERLSEQLLDLLCENLG 143          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.069e-41
Identity = 71/114 (62.28%), Postives = 94/114 (82.46%), Query Frame = 3
Query:  240 FPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQSEVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEF 581
            FP++DLSKL G+ER  TM +INDACENWGFFE+VNHG+ H+L+D  +++TKEHY   M+Q+F  M+ SKGLE ++ EV D+DWESTF+LRHLP SN+ +IPD+ D+YR AMK+F
Sbjct:    7 FPVVDLSKLIGEERDQTMALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQKFNDMLKSKGLENLEREVEDVDWESTFYLRHLPQSNLYDIPDMSDEYRTAMKDF 120          
BLAST of CF835350 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.182e-35
Identity = 68/117 (58.12%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  237 NFPIIDLSKLNGDERSATMEMINDACENWGFFELVNHGISHELLDTVQRLTKEHYGKCMDQRFKQMVASKGLEAVQS-EVNDLDWESTFFLRHLPVSNMAEIPDLEDDYRKAMKEFA 584
            +FP+I++  L G +R A M ++ DACENWGFFEL+NHGISHEL++ V+ + KEHY +  +QRFK+  ASK L++V++ + ++LDWESTFFLRHLP SN+++IPDL+DD R  MKEFA
Sbjct:    5 SFPVINMELLQGSQRPAAMALLRDACENWGFFELLNHGISHELMNRVEAVNKEHYRRFREQRFKEF-ASKTLDSVENVDPDNLDWESTFFLRHLPTSNISQIPDLDDDCRATMKEFA 120          
The following BLAST results are available for this feature:
BLAST of CF835350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACCO1_PETHY3.278e-4870.341-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO_DIOKA7.302e-4868.641-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
ACCO2_SOLLC7.302e-4872.651-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
ACCO3_CUCME9.537e-4870.691-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO1_ARATH1.377e-4667.801-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
ACCO_PERAE2.872e-4467.801-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO1_CUCME1.576e-4263.561-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO_DIACA2.275e-4156.52Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
ACCO1_BRAJU5.069e-4162.281-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO2_DORSP3.182e-3558.121-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835350 ID=CF835350; Name=CF835350; organism=Citrus sinensis; type=EST; length=641bp
CTAGTCTCGAGCTTTTTTTTTTTTTTTTAATAATTAGTATGGAAGATGGT
GATGGGGTTTAATCAGCAAGCACGAGAAGGAATCGGGCCCCGTCGTAGAC
AAACGCAATGGTATTGGCGTCCGAAAATGAAATGAAAATGAAATGAAAAT
GAAAATGGCTGGCTAGAGTTTTTTAAGTGATCATAGAGTAAGAAGGGAGA
TTGTGGGAGTTAAGAAACAAACAAATAACAATGGAGAATTTTCCAATTAT
TGACTTGTCAAAGCTCAATGGTGATGAGAGAAGTGCTACCATGGAAATGA
TCAATGATGCCTGTGAGAACTGGGGTTTCTTTGAGTTGGTGAATCATGGG
ATATCACATGAGCTGCTGGACACTGTTCAGAGGTTGACAAAGGAGCATTA
CGGGAAGTGTATGGACCAAAGATTCAAGCAAATGGTGGCAAGCAAGGGCC
TTGAAGCTGTTCAGTCCGAAGTTAATGATTTGGACTGGGAAAGCACTTTC
TTCTTGCGCCACCTTCCTGTTTCAAACATGGCTGAAATCCCCGATCTTGA
AGATGATTACAGGAAGGCAATGAAGGAATTTGCCGTTGAATTGGAGAANG
TTGCTGAGCAACTTCTGGAATTGTTGTGTGAGAATCTTGGG
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