CF835357

Overview
NameCF835357
Unique NameCF835357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPEA_PROM3 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9303) GN=speA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 3 
Query:    3 KIDTFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAE 302
            K+D FIG G   T L LH +      +   Y +GMFL GAY+E +G +HNLFG  + V +  + G   + +   + G +  +VL  M+H PE++ E L+  +E
Sbjct:  520 KLDRFIGNGQTKTLLELHNL-----RQNEAYMIGMFLAGAYQEVMGNLHNLFGSTNAVHIRMTTG-GGYQIDHVVRGNTNSEVLEAMEHNPEILLERLRLASE 616
[Close]
BLAST of CF835357 vs. ExPASy Swiss-Prot
Match: SPEA_PROMM (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9313) GN=speA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 3 
Query:    3 KIDTFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV-LQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAE 302
            K+D FIG G   T L LH +      +   Y +GMFL GAY+E +G +HNLFG  + V + L + G   + V   + G +  +VL  M+H PEL+ E L+  +E
Sbjct:  520 KLDRFIGNGQTKTLLELHNL-----RQNEAYMIGMFLAGAYQEVMGNLHNLFGSTNAVHIRLTTAG--GYQVDHVVRGNTNSEVLEAMEHNPELLLERLRLASE 616
The following BLAST results are available for this feature:
BLAST of CF835357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SPEA_PROM32.306e-1135.92Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PROMM6.708e-1138.46Biosynthetic arginine decarboxylase OS=Prochloroco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01B18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01B18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835357 ID=CF835357; Name=CF835357; organism=Citrus sinensis; type=EST; length=719bp
GTAAGATTGATACGTTCATTGGTGGTGGTACGAGCTTGCCGTTACATGAA
ATGGTTGGTGGTGGTTGTGGTGAGCGTGGGCCTTATTATTTGGGGATGTT
CTTGGGCGGGGCTTATGAGGAGGCCCTCGGTGGAGTCCACAACTTGTTTG
GTGGTCCAAGCGTGGTACGCGTCTTGCAGAGTGATGGTCCGCACAGCTTT
GCTGTGACTCGGGCCATGCCTGGGCCGTCTTGTGGGGATGTCCTCCGGGT
GATGCAGCACGAGCCCGAGCTCATGTTTGAGACCCTCAAACACCGTGCTG
AGGAATATTGTGGACAGGAGCATGGTAGTAATGGTGGGGATGGTGATACT
GATGATTACGATCACGGCATGGCTAATAATTCTGCTTTAGCTAGCAGCCT
TGCTCAGTACTTTCACAGCATGCCATATCTTGTGGTGCCATCCTCTTGTT
CTTTGACTGCTATCAATAATGGTGGTGGGTTATACTATTGCAACGGGGAG
GATTACGATGCTGTTGTTGATTCTTCTCCAAATGAGGATGAGCAGTGGTC
ATACTGCTATGCTTAGATGTGTATTCTTAGTATCACCTGTCACCCTATCG
AAATGCTTCATCTAATCCTTGAGCTTGTCTTGTTGCAAGTTTTTATTCCG
TAATTTTAATTTCATTGTCTATTTTAATTTTTAGATTTTCATTGCAAAAG
ATGGAAGCAGTTGAACGTT
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