CF835373

Overview
NameCF835373
Unique NameCF835373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:319..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 8.916e-45
Identity = 89/145 (61.38%), Postives = 108/145 (74.48%), Query Frame = 2
Query:  104 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535
            LYTELW  CAGPLV VPR  ERV+YFPQGH+EQ+ ASTNQ +  +++PV+DLP KILCRV++V LKAE +TDE +AQ+TL PE +Q E     +       +   HSF K LTASDTSTHGGFSVLR+HA ECLP LDM++  PT
Sbjct:   22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQSE-PTSLDPPIVGPTKQEFHSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPT 165          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.388e-44
Identity = 88/152 (57.89%), Postives = 111/152 (73.03%), Query Frame = 2
Query:   83 VGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535
            VGDPE  L+ ELW ACAGPLV VP+  ERV+YF QGH+EQ++  T+  +  +Q+ ++ +P KILC+V+NV+LKAE +TDE FAQ+TL P+ +Q+      +       R  VHSFCK LT SDTSTHGGFSVLRRHA+ECLPPLDMS   PT
Sbjct:   10 VGDPE--LFAELWRACAGPLVEVPQRDERVFYFLQGHLEQLQEPTDPALLAEQIKMFQVPYKILCKVVNVELKAETETDEVFAQITLQPDPDQENLPTLPDPPLPEQPRPVVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPT 159          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.286e-39
Identity = 80/162 (49.38%), Postives = 109/162 (67.28%), Query Frame = 2
Query:   50 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535
            N+    SG+  +   +  +Y +LW  CAGPL  +P+ GE+VYYFPQGHIE VEAST +  ++  P+ D PSK+ CRVI +QLK E ++DE +A++TL+P++ Q     + +       R  V+SF K LTASDTS HGGFSV ++HA ECLPPLDMS+  PT
Sbjct:    8 NTQPELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNQ----NQFRPLVNSFTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPT 163          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 8.083e-38
Identity = 78/145 (53.79%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            A+ +ELWHACAGPLV++P  G  V YFPQGH EQV AS  +  D  +P Y +LPSK++C + NV L A+P+TDE +AQ+TL P ++  + A++         R     FCKTLTASDTSTHGGFSV RR A++  PPLD S QPP
Sbjct:   46 AINSELWHACAGPLVSLPPAGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHNVTLHADPETDEVYAQMTLQPVTSYGKEALQLSELALKQARPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPP 190          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.801e-37
Identity = 78/145 (53.79%), Postives = 98/145 (67.59%), Query Frame = 2
Query:  101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            A+ +ELWHACAGPLV++P  G  V YFPQGH EQV AS  +  D  +P Y +LPSK++C +  V L A+PDTDE +AQ+TL P +   + A++         R  +  FCKTLTASDTSTHGGFSV RR A++  PPLD S QPP
Sbjct:   40 AINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHGVNLHADPDTDEVYAQMTLQPVNTYGKEALQISELALKQARPQMEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPP 184          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.239e-37
Identity = 77/151 (50.99%), Postives = 103/151 (68.21%), Query Frame = 2
Query:   83 VGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            V + +  L +ELWHACAGPLV++P  G RV YFPQGH EQV ASTN+  + Q+P Y +LP +++C++ NV + A+ +TDE +AQ+TL P S Q+              +   + FCKTLTASDTSTHGGFSV RR A++  PPLD ++QPP
Sbjct:   20 VAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPP 170          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.239e-37
Identity = 77/151 (50.99%), Postives = 103/151 (68.21%), Query Frame = 2
Query:   83 VGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            V + +  L +ELWHACAGPLV++P  G RV YFPQGH EQV ASTN+  + Q+P Y +LP +++C++ NV + A+ +TDE +AQ+TL P S Q+              +   + FCKTLTASDTSTHGGFSV RR A++  PPLD ++QPP
Sbjct:   20 VAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPP 170          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.167e-36
Identity = 76/149 (51.01%), Postives = 102/149 (68.46%), Query Frame = 2
Query:   89 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            + +  L +ELWHACAGPLV++P  G RV YFPQGH EQV ASTN+  + Q+P Y +LP +++C++ NV + A+ +TDE +AQ+TL P S Q+              +   + FCKTLTASDTSTHGGFSV RR A++  PPLD ++QPP
Sbjct:   22 EEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAELGSANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPP 170          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.167e-36
Identity = 76/149 (51.01%), Postives = 102/149 (68.46%), Query Frame = 2
Query:   89 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            + +  L +ELWHACAGPLV++P  G RV YFPQGH EQV ASTN+  + Q+P Y +LP +++C++ NV + A+ +TDE +AQ+TL P S Q+              +   + FCKTLTASDTSTHGGFSV RR A++  PPLD ++QPP
Sbjct:   22 EEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAELGSANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPP 170          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.167e-36
Identity = 78/159 (49.06%), Postives = 107/159 (67.30%), Query Frame = 2
Query:   62 TTSGVKRVG-DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            +TSG+ + G + E  L +ELWHACAGPLV++P  G RV YFPQGH EQV A+TN+  D  +P Y  LP +++C++ NV + A+ +TDE +AQ+TL P + +++             +   + FCKTLTASDTSTHGGFSV RR A++  PPLD + QPP
Sbjct:    4 STSGLGQQGHEGEKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPP 162          
The following BLAST results are available for this feature:
BLAST of CF835373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ARFR_ARATH8.916e-4561.38Auxin response factor 18 OS=Arabidopsis thaliana G... [more]
ARFA_ORYSJ3.388e-4457.89Auxin response factor 1 OS=Oryza sativa subsp. jap... [more]
ARFN_ARATH4.286e-3949.38Putative auxin response factor 14 OS=Arabidopsis t... [more]
ARFS_ORYSJ8.083e-3853.79Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFE_ORYSJ1.801e-3753.79Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSJ5.239e-3750.99Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI5.239e-3750.99Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFQ_ORYSJ1.167e-3651.01Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI1.167e-3651.01Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFH_ARATH1.167e-3649.06Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835373 ID=CF835373; Name=CF835373; organism=Citrus sinensis; type=EST; length=537bp
ACCCATTAAGTCTTGTAACGAGACTGGTAGAATTCCTATGGAACGGCAGA
ATAGTAATTCCACAACTTCCGGTGTCAAACGAGTTGGGGACCCCGAAATG
GCGCTCTACACGGAGCTGTGGCATGCCTGCGCCGGACCTTTGGTCACCGT
CCCTCGAGAAGGCGAGCGCGTGTACTACTTCCCTCAAGGCCACATAGAGC
AGGTGGAAGCGTCAACTAATCAGGTCGCAGACCAGCAAATGCCAGTTTAT
GATCTTCCTTCAAAGATACTCTGTCGTGTAATTAACGTCCAATTAAAGGC
TGAACCTGATACTGATGAGGCGTTTGCTCAAGTGACTTTACTTCCAGAGT
CAAACCAAGATGAGAACGCGGTGGAGAAAGAACCACCTCCACCCCCGCCA
CCAAGATTTCACGTGCATTCGTTTTGTAAAACACTAACGGCATCGGATAC
AAGTACTCATGGTGGGTTTTCGGTACTGAGACGGCATGCTGATGAGTGTC
TTCCACCCTTGGACATGTCACGGCAGCCTCCCACACA
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