CF835373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 8.916e-45 Identity = 89/145 (61.38%), Postives = 108/145 (74.48%), Query Frame = 2 Query: 104 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 LYTELW CAGPLV VPR ERV+YFPQGH+EQ+ ASTNQ + +++PV+DLP KILCRV++V LKAE +TDE +AQ+TL PE +Q E + + HSF K LTASDTSTHGGFSVLR+HA ECLP LDM++ PT Sbjct: 22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQSE-PTSLDPPIVGPTKQEFHSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPT 165
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 3.388e-44 Identity = 88/152 (57.89%), Postives = 111/152 (73.03%), Query Frame = 2 Query: 83 VGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQ-VADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 VGDPE L+ ELW ACAGPLV VP+ ERV+YF QGH+EQ++ T+ + +Q+ ++ +P KILC+V+NV+LKAE +TDE FAQ+TL P+ +Q+ + R VHSFCK LT SDTSTHGGFSVLRRHA+ECLPPLDMS PT Sbjct: 10 VGDPE--LFAELWRACAGPLVEVPQRDERVFYFLQGHLEQLQEPTDPALLAEQIKMFQVPYKILCKVVNVELKAETETDEVFAQITLQPDPDQENLPTLPDPPLPEQPRPVVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPT 159
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2) HSP 1 Score: 160.614 bits (405), Expect = 4.286e-39 Identity = 80/162 (49.38%), Postives = 109/162 (67.28%), Query Frame = 2 Query: 50 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 N+ SG+ + + +Y +LW CAGPL +P+ GE+VYYFPQGHIE VEAST + ++ P+ D PSK+ CRVI +QLK E ++DE +A++TL+P++ Q + + R V+SF K LTASDTS HGGFSV ++HA ECLPPLDMS+ PT Sbjct: 8 NTQPELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVIAIQLKVENNSDETYAEITLMPDTTQVVIPTQNQ----NQFRPLVNSFTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPT 163
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 8.083e-38 Identity = 78/145 (53.79%), Postives = 99/145 (68.28%), Query Frame = 2 Query: 101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 A+ +ELWHACAGPLV++P G V YFPQGH EQV AS + D +P Y +LPSK++C + NV L A+P+TDE +AQ+TL P ++ + A++ R FCKTLTASDTSTHGGFSV RR A++ PPLD S QPP Sbjct: 46 AINSELWHACAGPLVSLPPAGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHNVTLHADPETDEVYAQMTLQPVTSYGKEALQLSELALKQARPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPP 190
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2) HSP 1 Score: 155.221 bits (391), Expect = 1.801e-37 Identity = 78/145 (53.79%), Postives = 98/145 (67.59%), Query Frame = 2 Query: 101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 A+ +ELWHACAGPLV++P G V YFPQGH EQV AS + D +P Y +LPSK++C + V L A+PDTDE +AQ+TL P + + A++ R + FCKTLTASDTSTHGGFSV RR A++ PPLD S QPP Sbjct: 40 AINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHGVNLHADPDTDEVYAQMTLQPVNTYGKEALQISELALKQARPQMEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPP 184
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 5.239e-37 Identity = 77/151 (50.99%), Postives = 103/151 (68.21%), Query Frame = 2 Query: 83 VGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 V + + L +ELWHACAGPLV++P G RV YFPQGH EQV ASTN+ + Q+P Y +LP +++C++ NV + A+ +TDE +AQ+TL P S Q+ + + FCKTLTASDTSTHGGFSV RR A++ PPLD ++QPP Sbjct: 20 VAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPP 170
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 5.239e-37 Identity = 77/151 (50.99%), Postives = 103/151 (68.21%), Query Frame = 2 Query: 83 VGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 V + + L +ELWHACAGPLV++P G RV YFPQGH EQV ASTN+ + Q+P Y +LP +++C++ NV + A+ +TDE +AQ+TL P S Q+ + + FCKTLTASDTSTHGGFSV RR A++ PPLD ++QPP Sbjct: 20 VAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPP 170
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.167e-36 Identity = 76/149 (51.01%), Postives = 102/149 (68.46%), Query Frame = 2 Query: 89 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 + + L +ELWHACAGPLV++P G RV YFPQGH EQV ASTN+ + Q+P Y +LP +++C++ NV + A+ +TDE +AQ+TL P S Q+ + + FCKTLTASDTSTHGGFSV RR A++ PPLD ++QPP Sbjct: 22 EEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAELGSANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPP 170
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.167e-36 Identity = 76/149 (51.01%), Postives = 102/149 (68.46%), Query Frame = 2 Query: 89 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 + + L +ELWHACAGPLV++P G RV YFPQGH EQV ASTN+ + Q+P Y +LP +++C++ NV + A+ +TDE +AQ+TL P S Q+ + + FCKTLTASDTSTHGGFSV RR A++ PPLD ++QPP Sbjct: 22 EEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAELGSANKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPP 170
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 1.167e-36 Identity = 78/159 (49.06%), Postives = 107/159 (67.30%), Query Frame = 2 Query: 62 TTSGVKRVG-DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 +TSG+ + G + E L +ELWHACAGPLV++P G RV YFPQGH EQV A+TN+ D +P Y LP +++C++ NV + A+ +TDE +AQ+TL P + +++ + + FCKTLTASDTSTHGGFSV RR A++ PPLD + QPP Sbjct: 4 STSGLGQQGHEGEKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPP 162 The following BLAST results are available for this feature:
BLAST of CF835373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835373 ID=CF835373; Name=CF835373; organism=Citrus sinensis; type=EST; length=537bpback to top |