CF835373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2) HSP 1 Score: 152.14 bits (383), Expect = 1.524e-36 Identity = 77/161 (47.83%), Postives = 107/161 (66.46%), Query Frame = 2 Query: 50 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 N+ SG+ + + +Y +LW CAGPL +P+ GE VYYFPQG+IE V+AST + ++ P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q + E R V+SF K LTASDTS +GGFSV ++HA ECLPPLDMS+ P Sbjct: 8 NAQPKLSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDEIYAEITLMPDTTQVVIPTQSE----NRFRPLVNSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLP 162
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2) HSP 1 Score: 152.14 bits (383), Expect = 1.524e-36 Identity = 77/161 (47.83%), Postives = 105/161 (65.22%), Query Frame = 2 Query: 50 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 N+ SG+ + + +Y +LW CAGPL +P+ GE+VYYFPQGHIE VE ST + ++ P+ DLPSK+ CRVI + LK E ++DE +A++TL+P++ Q + E R V+SF K LTASDTS HGGF V ++HA ECLP LDMS+ P Sbjct: 8 NAQPELSGI--IDGSKSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQNE----NQFRPLVNSFTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLP 162
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.991e-36 Identity = 76/147 (51.70%), Postives = 101/147 (68.71%), Query Frame = 2 Query: 95 EMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 + L +ELWHACAGPLV++P RV YFPQGH EQV ASTN+ D Q+P Y +LP +++C++ NV + A+ +TDE +AQ+TL P S +++ + + FCKTLTASDTSTHGGFSV RR A++ PPLD S+QPP Sbjct: 22 QRCLNSELWHACAGPLVSLPVVRSRVVYFPQGHSEQVAASTNKEVDAQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPEEQKEPFLPMELGAASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPP 168
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 2.600e-36 Identity = 82/185 (44.32%), Postives = 111/185 (60.00%), Query Frame = 2 Query: 20 ETGRIPMERQNSNSTTSGVKRVGDPE---MALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLP----------ESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535 + GR+ + +S+S +SG ++Y+ELWHACAGPL +P++G V YFPQGH+EQ +A + + ++P +DL +I+CRV+NVQL A DTDE + QVTLLP E E+E + H FCKTLTASDTSTHGGFSV RR A++C PLD +Q P+ Sbjct: 31 DKGRLGISPSSSSSCSSGSSSSSSSTGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIPKFDLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPS 214
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 4.435e-36 Identity = 74/149 (49.66%), Postives = 102/149 (68.46%), Query Frame = 2 Query: 89 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 + + L +ELWHACAGPLV +P G RV YFPQGH EQV ASTN+ + +P Y +LP++++C++ +V + A+ +TDE +AQ+TL P + Q++N + + FCKTLTASDTSTHGGFSV RR A+ PPLD ++QPP Sbjct: 23 EEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPP 171
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 4.435e-36 Identity = 74/149 (49.66%), Postives = 102/149 (68.46%), Query Frame = 2 Query: 89 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 + + L +ELWHACAGPLV +P G RV YFPQGH EQV ASTN+ + +P Y +LP++++C++ +V + A+ +TDE +AQ+TL P + Q++N + + FCKTLTASDTSTHGGFSV RR A+ PPLD ++QPP Sbjct: 23 EEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPP 171
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 4.435e-36 Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = 2 Query: 65 TSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 T G K+V + +ELWHACAGPLV +P+ G VYYFPQGH EQV A+T ++ + ++P Y +LPS++LC+V N+ L A+ DTDE +AQ+TL P +++ + + FCK LTASDTSTHGGFSV RR A++ P LD S QPP Sbjct: 29 TQGAKKV------INSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPP 179
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 4.435e-36 Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = 2 Query: 65 TSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 T G K+V + +ELWHACAGPLV +P+ G VYYFPQGH EQV A+T ++ + ++P Y +LPS++LC+V N+ L A+ DTDE +AQ+TL P +++ + + FCK LTASDTSTHGGFSV RR A++ P LD S QPP Sbjct: 29 TQGAKKV------INSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPP 179
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 5.793e-36 Identity = 80/156 (51.28%), Postives = 103/156 (66.03%), Query Frame = 2 Query: 68 SGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVY-DLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 +G KRV L +ELWHACAGPLV++P G RV YFPQGH EQV ASTN+ D +P Y L +++C++ NV + A+ +TDE +AQ+TL P + Q++ R + FCKTLTASDTSTHGGFSV RR A++ PPLD S+QPP Sbjct: 16 TGEKRV------LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPP 165
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFW_ARATH (Putative auxin response factor 23 OS=Arabidopsis thaliana GN=ARF23 PE=5 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 9.881e-36 Identity = 79/161 (49.07%), Postives = 103/161 (63.98%), Query Frame = 2 Query: 50 NSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 N S SG+ + + +Y +LW CAGPL +P+ GE+VYYFPQGHIE VEAST + ++ P DLPSK+ CRVI + LK E ++DE + ++TL+P++ Q E E R V+SF K LTASDTS G FSV +HA ECLPPLDMS+ P Sbjct: 8 NVQSELSGI--IDGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVIAIHLKVENNSDETYVEITLMPDTTQVVIPTENE----NQFRPIVNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIP 162 The following BLAST results are available for this feature:
BLAST of CF835373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835373 ID=CF835373; Name=CF835373; organism=Citrus sinensis; type=EST; length=537bpback to top |