CF835373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.888e-19 Identity = 55/153 (35.95%), Postives = 82/153 (53.59%), Query Frame = 2 Query: 86 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQD----ENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 G E L +LWHACAG +V +P +V+YFPQGH E + + V +P+ P +LCRV+ ++ A+ ++DE FA++ L+P + + E ++ SF KTLT SD + GGFSV R A+ P LD + +PP Sbjct: 10 GGTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAEN---AYDCVDFGNLPI---PPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPP 156
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.434e-19 Identity = 60/164 (36.59%), Postives = 79/164 (48.17%), Query Frame = 2 Query: 74 VKRVGDPE--MALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTN-QVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHV--------HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 +K VG+ E L +LWHACAG +V +P RVYYF QGH E + A ++ LP +LCRV VQ A+ D+DE +A++ L P + + E + SF KTLT SD + GGFSV R A+ P LD PP Sbjct: 1 MKEVGEVEEVRCLDPQLWHACAGGMVQMPAPRSRVYYFAQGHAEHADGGGGAAAAAAELGPRALPPLVLCRVEGVQFLADRDSDEVYAKIRLAPVAPGEAEFREPDELCPLGAAGDAAEPSPEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPP 164
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15 Identity = 51/143 (35.66%), Postives = 65/143 (45.45%), Query Frame = 2 Query: 116 LWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVE----KEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 +W ACAG V +P RVYYFPQGH+E + + PV C + ++QL A+P TDE FA + L P + Q V +F K LT SD + GGFSV R AD P L+ PP Sbjct: 20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTSPV-------PCIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPP 155
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 2.005e-12 Identity = 53/151 (35.10%), Postives = 69/151 (45.70%), Query Frame = 2 Query: 116 LWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYD-LPSK---ILCRVINVQLKAEPDTDEAFAQVTLLPESNQ--------DENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532 +W ACA PL +P G +V YFP+GH EQ A P+ D LPS LC + V L A+ T E +A ++LLP + A E R+ + K LT SD + GGFSV R AD P L++ PP Sbjct: 28 VWLACAAPLSRIPVVGTQVSYFPEGHAEQCPA----------PLPDPLPSAHRFFLCTITAVDLSADTTTGEPYATISLLPLRHDAPAPAPAPAPAAAELAEAESQEFRY----YAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPP 164 The following BLAST results are available for this feature:
BLAST of CF835373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835373 ID=CF835373; Name=CF835373; organism=Citrus sinensis; type=EST; length=537bpback to top |