CF835373

Overview
NameCF835373
Unique NameCF835373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:319..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.888e-19
Identity = 55/153 (35.95%), Postives = 82/153 (53.59%), Query Frame = 2
Query:   86 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQD----ENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            G  E  L  +LWHACAG +V +P    +V+YFPQGH E    + + V    +P+   P  +LCRV+ ++  A+ ++DE FA++ L+P  + +    E    ++            SF KTLT SD +  GGFSV R  A+   P LD + +PP
Sbjct:   10 GGTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAEN---AYDCVDFGNLPI---PPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPP 156          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.434e-19
Identity = 60/164 (36.59%), Postives = 79/164 (48.17%), Query Frame = 2
Query:   74 VKRVGDPE--MALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTN-QVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHV--------HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            +K VG+ E    L  +LWHACAG +V +P    RVYYF QGH E  +       A  ++    LP  +LCRV  VQ  A+ D+DE +A++ L P +  +    E +                    SF KTLT SD +  GGFSV R  A+   P LD    PP
Sbjct:    1 MKEVGEVEEVRCLDPQLWHACAGGMVQMPAPRSRVYYFAQGHAEHADGGGGAAAAAAELGPRALPPLVLCRVEGVQFLADRDSDEVYAKIRLAPVAPGEAEFREPDELCPLGAAGDAAEPSPEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPP 164          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 51/143 (35.66%), Postives = 65/143 (45.45%), Query Frame = 2
Query:  116 LWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVE----KEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            +W ACAG  V +P    RVYYFPQGH+E      + +     PV        C + ++QL A+P TDE FA + L P + Q                      V +F K LT SD +  GGFSV R  AD   P L+    PP
Sbjct:   20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTSPV-------PCIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPP 155          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.005e-12
Identity = 53/151 (35.10%), Postives = 69/151 (45.70%), Query Frame = 2
Query:  116 LWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYD-LPSK---ILCRVINVQLKAEPDTDEAFAQVTLLPESNQ--------DENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            +W ACA PL  +P  G +V YFP+GH EQ  A          P+ D LPS     LC +  V L A+  T E +A ++LLP  +            A E         R+    + K LT SD +  GGFSV R  AD   P L++   PP
Sbjct:   28 VWLACAAPLSRIPVVGTQVSYFPEGHAEQCPA----------PLPDPLPSAHRFFLCTITAVDLSADTTTGEPYATISLLPLRHDAPAPAPAPAPAAAELAEAESQEFRY----YAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPP 164          
The following BLAST results are available for this feature:
BLAST of CF835373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ARFP_ARATH2.888e-1935.95Auxin response factor 16 OS=Arabidopsis thaliana G... [more]
ARFV_ORYSJ6.434e-1936.59Auxin response factor 22 OS=Oryza sativa subsp. ja... [more]
ARFQ_ARATH5.637e-1535.66Auxin response factor 17 OS=Arabidopsis thaliana G... [more]
ARFM_ORYSJ2.005e-1235.10Auxin response factor 13 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835373 ID=CF835373; Name=CF835373; organism=Citrus sinensis; type=EST; length=537bp
ACCCATTAAGTCTTGTAACGAGACTGGTAGAATTCCTATGGAACGGCAGA
ATAGTAATTCCACAACTTCCGGTGTCAAACGAGTTGGGGACCCCGAAATG
GCGCTCTACACGGAGCTGTGGCATGCCTGCGCCGGACCTTTGGTCACCGT
CCCTCGAGAAGGCGAGCGCGTGTACTACTTCCCTCAAGGCCACATAGAGC
AGGTGGAAGCGTCAACTAATCAGGTCGCAGACCAGCAAATGCCAGTTTAT
GATCTTCCTTCAAAGATACTCTGTCGTGTAATTAACGTCCAATTAAAGGC
TGAACCTGATACTGATGAGGCGTTTGCTCAAGTGACTTTACTTCCAGAGT
CAAACCAAGATGAGAACGCGGTGGAGAAAGAACCACCTCCACCCCCGCCA
CCAAGATTTCACGTGCATTCGTTTTGTAAAACACTAACGGCATCGGATAC
AAGTACTCATGGTGGGTTTTCGGTACTGAGACGGCATGCTGATGAGTGTC
TTCCACCCTTGGACATGTCACGGCAGCCTCCCACACA
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