CF835376

Overview
NameCF835376
Unique NameCF835376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: HXT3_YEAST (Low-affinity glucose transporter HXT3 OS=Saccharomyces cerevisiae GN=HXT3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.140e-15
Identity = 59/201 (29.35%), Postives = 93/201 (46.27%), Query Frame = -3
Query:  288 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFL-VSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIV----CAFTVAFVSLWVPETKGRSLEEI 875
            GI +  LQQL+G N   +Y + +F   G+S S   +   GVV   +T  + + +D+ GRR        GM   + +  S+         E +      G   +V     +  F+     I +V++SE  P+ +KS A S+AT ANWL  +++     F   + +G     YG V      F   +V  +VPETKG +LEE+
Sbjct:  325 GIMIQSLQQLTGDNYFFYYGTTVFNAVGMSDSFETSIVFGVVNFFSTCCSLYTVDRFGRRNCLLYGAIGMVCCYVVYASVGVTRLWPNGEGNGSSKGAGNCMIVFACFYIFCFATTWAPIAYVVISETFPLRVKSKAMSIATAANWLWGFLI----GFFTPFITGAINFYYGYVFMGCMVFAYFYVFFFVPETKGLTLEEV 521          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR5_SHEEP (Solute carrier family 2, facilitated glucose transporter member 5 OS=Ovis aries GN=SLC2A5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.063e-14
Identity = 53/201 (26.37%), Postives = 102/201 (50.75%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNV--ATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            I L+  QQLSG+N + +Y+  I+ +AG+   +V   T G G V V+ T    ++++  GRR       S    +  +++ A  ++  +S        +  +S+  +++ VI  +LG   IP ++++EI   + +  A  VA   +WL ++ V +   F+       +F+I+ ++C  T  ++ L +PETK ++  EI   F
Sbjct:  282 IVLMAGQQLSGVNAIYYYADQIYLSAGVKEDDVQYVTAGTGAVNVLITVCAIFVVELMGRRFLLLLGFSVCFTACCVLTGALAMQDVISW-------MPYVSIACVISYVIGHALGPSPIPALLVTEIFLQSSRPAAYMVAGTVHWLSNFTVGLVFPFIQVGLGAYSFVIFAVICFLTTVYIFLIIPETKSKTFIEINQIF 475          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR4_CANFA (Solute carrier family 2, facilitated glucose transporter member 4 (Fragment) OS=Canis familiaris GN=SLC2A4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.388e-14
Identity = 50/169 (29.59%), Postives = 81/169 (47.93%), Query Frame = -3
Query:  309 SNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETK 815
            ++IF  AG+     AT G GVV  V T V+ +L+++AGRR       +GM     L++IA  L             +  +S+V +   V  F +G G IPW I++E+     +  A +VA   NW  ++I+ M   ++        FL++ ++      F  L VPET+
Sbjct:    1 TSIFETAGVGQPAYATIGAGVVNTVFTLVSVFLVERAGRRTLHLLGLAGMCGCAILMTIALLL-------LERLPAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFCNWTSNFIIGMGFQYIAXAMGPYVFLLFAVLLLAFFIFTFLKVPETR 162          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: ARAE_KLEOX (Arabinose-proton symporter OS=Klebsiella oxytoca GN=araE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.388e-14
Identity = 59/207 (28.50%), Postives = 107/207 (51.69%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVS---EDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAF--VSLW-VPETKGRSLEEIQ 875
            G+ L  +QQ +G+N +++Y+  IF  AG +++    VAT  +G+  + AT +  + +DKAGR+         +   F +++I   + G+     ++    S L  LS+   +  +  +++    + W++ SEI P+  +    + +T  NW+ + I+  T   LLD   + GTF +Y    A  VAF  V+ W +PETK  +LE I+
Sbjct:  262 GMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMVATLVVGLTFMFATFIAVFTVDKAGRKP-------ALKIGFSVMAIGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDAIGAAGTFWLY---TALNVAFIGVTFWLIPETKNVTLEHIE 458          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: HXT1_YEAST (Low-affinity glucose transporter HXT1 OS=Saccharomyces cerevisiae GN=HXT1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 57/201 (28.36%), Postives = 93/201 (46.27%), Query Frame = -3
Query:  288 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFL-VSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIV----CAFTVAFVSLWVPETKGRSLEEI 875
            GI +  LQQL+G N   +Y + +F   G+S S   +   GVV   +T  + + +D+ GRR        GM   + +  S+         +D       G   +V     +  F+     I +V++SE  P+ +KS   S+A+ ANW+  ++++    F+    +G     YG V      F   +V  +VPETKG SLEE+
Sbjct:  328 GIMIQSLQQLTGDNYFFYYGTIVFQAVGLSDSFETSIVFGVVNFFSTCCSLYTVDRFGRRNCLMWGAVGMVCCYVVYASVGVTRLWPNGQDQPSSKGAGNCMIVFACFYIFCFATTWAPIAYVVISECFPLRVKSKCMSIASAANWIWGFLISFFTPFI----TGAINFYYGYVFMGCMVFAYFYVFFFVPETKGLSLEEV 524          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR10_XENLA (Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus laevis GN=slc2a10 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = -3
Query:  288 YSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT-ANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 596
            Y+IL  ++L+ ++  V +FS+G G + W+++SEI P +I+  A +     NW  + ++T+T    +     G TFL+YG V    +AF+  ++PETKG+SLEEI
Sbjct:  412 YAILNWITLLSMMAFVSAFSIGFGPMTWLVLSEIYPADIRGRAFAFCNSFNWAANLLITLTFLEVIGSIGLGWTFLLYGGVGLLAIAFIYFFIPETKGQSLEEI 515          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: ARAE_ECOLI (Arabinose-proton symporter OS=Escherichia coli (strain K12) GN=araE PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.368e-14
Identity = 59/204 (28.92%), Postives = 106/204 (51.96%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSL--W-VPETKGRSLEEIQ 875
            G+ L  +QQ +G+N +++Y+  IF  AG +++    +AT  +G+  + AT +  + +DKAGR+       S MA    +  + + L  F  ++    S L  LS+   +  +  +++    + W++ SEI P+  +    + +T  NW+ + I+  T   LLD   + GTF +Y    A  +AFV +  W +PETK  +LE I+
Sbjct:  262 GMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLV--LGYCLMQF--DNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLY---TALNIAFVGITFWLIPETKNVTLEHIE 458          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: ARAE_ECO57 (Arabinose-proton symporter OS=Escherichia coli O157:H7 GN=araE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.368e-14
Identity = 59/204 (28.92%), Postives = 106/204 (51.96%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSL--W-VPETKGRSLEEIQ 875
            G+ L  +QQ +G+N +++Y+  IF  AG +++    +AT  +G+  + AT +  + +DKAGR+       S MA    +  + + L  F  ++    S L  LS+   +  +  +++    + W++ SEI P+  +    + +T  NW+ + I+  T   LLD   + GTF +Y    A  +AFV +  W +PETK  +LE I+
Sbjct:  262 GMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLV--LGYCLMQF--DNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLY---TALNIAFVGITFWLIPETKNVTLEHIE 458          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: ITR1_SCHPO (Myo-inositol transporter 1 OS=Schizosaccharomyces pombe GN=itr1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14
Identity = 57/203 (28.08%), Postives = 100/203 (49.26%), Query Frame = -3
Query:  288 GLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAF-FLE-----GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL---DWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 869
            GL  +QQLSG N ++++SS IF   G ++       +     V T V   ++D  GRR        GM A+  + ++AF FL       + S  S  ++   I+ L+ ++  V S++ G+G +PW   SE+ P++++ L   ++T  NW  +  + + A+FL    + +  GTF +YG +C           P+    ++EEI
Sbjct:  344 GLQAMQQLSGFNSLMYFSSTIFEVVGFNNPTATGLIIAATNFVFTIVAFGVIDFFGRRILLLLTVWGMIAALIVCAVAFHFLPKDENGNYTSGQSNAWA---IVVLISMIVYVASYASGLGNLPWQ-QSELFPMSVRGLGTGMSTAVNWAGN--LGIGASFLTLMSEITPTGTFALYGGLCFLGWLGALFCYPDLTDYTIEEI 540          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR9_PONAB (Solute carrier family 2, facilitated glucose transporter member 9 OS=Pongo abelii GN=SLC2A9 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 50/194 (25.77%), Postives = 92/194 (47.42%), Query Frame = -3
Query:  276 QLSGINGVLFYSSNIFANAGISSSNV--ATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 851
            QL G+N + FY+++IF  AGI  + +   T   G ++ +A   +  +++  GRR         MA  F  +++   L+            +  LS+VG++ ++ SF  G G IP+++  E    + +  A  +A   NWL ++ V +   F+        FL++  +C     ++   +PETK R+  EI  +F
Sbjct:  327 QLCGLNAIWFYTNSIFGKAGIPPAKIPYVTLSTGGIETLAAIFSGLVIEHLGRRPLLIGGFGLMALFFGTLTVTLTLQDRAPW-------VPYLSIVGILAIIASFCSGPGGIPFILTGEFFQQSQRPAAFIIAGTVNWLSNFAVGLLFPFIQKSLDTYCFLVFATICMTGAIYLYFVLPETKNRTYAEISQAF 513          
The following BLAST results are available for this feature:
BLAST of CF835376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
HXT3_YEAST8.140e-1529.35Low-affinity glucose transporter HXT3 OS=Saccharom... [more]
GTR5_SHEEP1.063e-1426.37Solute carrier family 2, facilitated glucose trans... [more]
GTR4_CANFA1.388e-1429.59Solute carrier family 2, facilitated glucose trans... [more]
ARAE_KLEOX1.388e-1428.50Arabinose-proton symporter OS=Klebsiella oxytoca G... [more]
HXT1_YEAST1.813e-1428.36Low-affinity glucose transporter HXT1 OS=Saccharom... [more]
GTR10_XENLA1.813e-1437.50Solute carrier family 2, facilitated glucose trans... [more]
ARAE_ECOLI2.368e-1428.92Arabinose-proton symporter OS=Escherichia coli (st... [more]
ARAE_ECO572.368e-1428.92Arabinose-proton symporter OS=Escherichia coli O15... [more]
ITR1_SCHPO3.093e-1428.08Myo-inositol transporter 1 OS=Schizosaccharomyces ... [more]
GTR9_PONAB4.040e-1425.77Solute carrier family 2, facilitated glucose trans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835376 ID=CF835376; Name=CF835376; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTCCCAAAACTGGAGATAATTATTTACTACCCCTTAA
TGTTCCAGTGAAAAAGAGTAATTTATCCATTGCCCTTTCCTTTTCCCCTT
CAACAACACCACAAAGCAACTGTCGTAGACCGCCCCTACAGATGATACAA
TGAACTATGGAGCAATGATGGAAGCAATTCGCACAAATAAAAGCGCATTG
ACATATACTTGGGAAGGATTAGGACACATGGGTGGAGAAGCTCTTTATTA
CAAATGCAAGCCAACAATTTTATCTGAAGGAAAACTGAATTTCTTCCAGA
CTTCTTCCTTTGGTTTCAGGAACCCAGAGAGACACAAAAGCAACAGTGAA
AGCACACACTATCCCGTATATCAAGAAGGTGCCTCCACTGCTCCAATCTA
ACAGAAAATTTGCAGTCATTGTGACAATCCACGATACCAGCCAGTTTGCC
AACGTTGCAACACTGCCAGCAAGGCTCTTGATATTCACTGGAAGTATCTC
GGACATTATAACCCAAGGAATAGCTCCAACTCCCAAAGAGAATGAAATCA
CTACAGTCACAAGACCGACAAGCGACAATATCCCCAATATGCTATAAAAG
CGAGAATCTTCTGACACAAAACCCTCCAAAAAGAATGCAATCGAAACAAG
GAAAAAACTAGCAGCCATTCCAGATGATGATATTAAAAGAAGAAGCCTGC
GGCCAGCTTTGTCCATCAACCATGTATTGACCCCAGTGGCAACAACCTGA
ACAACCCCAAGTCCAAATGTAGCAACGTTACTTGATGAAATCCCAGCGTT
AGCAAAAATGTTACTGGAATAGAATAAAACACCATTGATGCCACTGAGTT
GCTGAAGAACCAGTAATCCTATTCCTA
back to top