CF835376

Overview
NameCF835376
Unique NameCF835376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:941..1817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: ITR2_YEAST (Myo-inositol transporter 2 OS=Saccharomyces cerevisiae GN=ITR2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 61/204 (29.90%), Postives = 97/204 (47.55%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEG--FVSED----SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT-ANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 875
            G GL  +QQ +G N ++++S  IF   G  +S+  +  +     V T +  + +DK GRR        GM  +  + +IAF   G  F   D    S  +S  GI+ +V ++     ++LG+G +PW   SE+ P N++ +  S AT  NW  S ++  T    L + +  GTF  +  V   +  F     PE  G  LEE+Q
Sbjct:  364 GCGLQAIQQFTGWNSLMYFSGTIFETVGFKNSSAVSIIVSGTNFVFTLIAFFCIDKIGRRYILLIGLPGMTVALVICAIAFHFLGIKFNGADAVVASDGFSSWGIVIIVFIIVYAAFYALGIGTVPWQ-QSELFPQNVRGVGTSYATATNWAGSLVIASTFLTMLQNITPTGTFSFFAGVACLSTIFCYFCYPELSGLELEEVQ 566          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: YNCC_BACSU (Putative metabolite transport protein yncC OS=Bacillus subtilis GN=yncC PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 58/208 (27.88%), Postives = 110/208 (52.88%), Query Frame = -3
Query:  273 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSI-AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLG-VGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGG---TFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 875
            GIG+ ++ Q++G+N +++Y + I   +G  +    +A  G G++ V+A     WL+ K  RR       +G   +  L++I +  L+G ++     Y +L       L  + ++F  G VG + W++++EI P  ++ L   ++    W++++++      LL  SS G   TF I+  +    + FV  ++PETKGR+LEE++  FR
Sbjct:  260 GIGVAIVNQITGVNSIMYYGTQILKESGFGTKAALIANIGNGLISVIAVIFGIWLVGKVRRRPILLIGLAGTTTALLLIAIFSIVLDGSMALP---YVVLS------LTVLFLAFMQGCVGPVTWLVIAEIFPQRLRGLGSGISVFFLWILNFVIGFAFPILL--SSVGLSFTFFIFVALGVLAIGFVYKFMPETKGRTLEELEEHFR 456          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.171e-19
Identity = 62/205 (30.24%), Postives = 104/205 (50.73%), Query Frame = -3
Query:  273 GIGLLVLQQLSGINGVLFYSSNIFANAGI--SSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIA-FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSS-GGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 875
            G+GL  LQQ  G N +++Y+   F N G   S+S + T G+G V V+ T V   ++DK GR+       +GM  S  ++++   F +   +        LG+         ++ F++  G + WV++ E+ P++++ +   V+TL   + + IV++T   L++       FLIY  +      FV   V ETKGRSLEEI+   R
Sbjct:  244 GLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTPAASWTTVICLGVF--------IVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAFLFVRFKVTETKGRSLEEIEQDLR 440          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: MSSP2_ARATH (Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.447e-19
Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = -3
Query:  288 GIGLLVLQQLSGINGVLFYSSNI---------FANAGISSSNVATFGLGV---VQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL-DWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 875
            G+GL +LQQ SGINGVL+Y+  I          +N GISSS+ +     +   V + A  V   LMD +GRR         + AS  ++ I+      V  +S  ++   +LS V +V     F +G G  P ++ SEI P  ++ +  ++  L  W+   IVT +   LL      G F +Y IVC  +  FV + VPETKG  LE I
Sbjct:  511 GVGLQILQQFSGINGVLYYTPQILEQAGVGILLSNMGISSSSASLLISALTTFVMLPAIAVAMRLMDLSGRRTLLLTTIPILIASLLVLVIS----NLVHMNSIVHA---VLSTVSVVLYFCFFVMGFGPAPNILCSEIFPTRVRGICIAICALTFWICDIIVTYSLPVLLKSIGLAGVFGMYAIVCCISWVFVFIKVPETKGMPLEVI 712          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GLCP_SYNY3 (Glucose transport protein OS=Synechocystis sp. (strain PCC 6803) GN=gtr PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 7.114e-19
Identity = 61/199 (30.65%), Postives = 101/199 (50.75%), Query Frame = -3
Query:  288 GIGLLVLQQLSGINGVLFYSSNIFANAGISS--SNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW-SSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 875
            G+GL  LQQ  GIN + +YSS ++ + G +   S + T   G + ++ T V    +DK GR+        GM  +  ++S+ F     V+         GI++LV     V SF    G I WV++ E+    I++ A SVA    W+ ++I++ T   LLD    G  + +Y    A ++ F+  +V ETKG++LE++
Sbjct:  270 GMGLSALQQFVGINVIFYYSSVLWRSVGFTEEKSLLITVITGFINILTTLVAIAFVDKFGRKPLLLMGSIGMTITLGILSVVFGGATVVNGQPTLTGAAGIIALVTANLYVFSFGFSWGPIVWVLLGEMFNNKIRAAALSVAAGVQWIANFIISTTFPPLLDTVGLGPAYGLYATSAAISIFFIWFFVKETKGKTLEQM 468          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.213e-18
Identity = 57/204 (27.94%), Postives = 99/204 (48.53%), Query Frame = -3
Query:  273 GIGLLVLQQLSGINGVLFYSSNIFANAGI--SSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 875
            G+GL + QQ  GIN V++Y+  IF  AG+  S+S + T G+G++ V+       L+D+ GR+        G+  S   +S      G  +  +        +++V L   ++ +    G + WV+M E+ P   +  A    TL     + IV++    +L        F+++ ++C  +  F    VPETKG+SLEEI+ S +
Sbjct:  246 GVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGILNVIMCITAMILIDRVGRKKLLIWGSVGITLSLAALSGVLLTLGLSASTA-------WMTVVFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFAFYMVPETKGKSLEEIEASLK 442          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: XYLL3_ARATH (D-xylose-proton symporter-like 3 OS=Arabidopsis thaliana GN=At5g59250 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.070e-18
Identity = 68/202 (33.66%), Postives = 110/202 (54.46%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVAT---FGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAF-FLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDW-SSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 875
            G GL++ QQ++G   VL+Y+ +I   AG S++  AT     +GV +++ T V    +D  GRR       SG+A S FL+S  + FL GF            ++++  L+  V  + +  G I W+++SEI P+  +    S+A L N+  + IVT   + L ++  +   FL++G +   ++ FV L VPETKG SLEEI+
Sbjct:  363 GGGLVLFQQITGQPSVLYYAGSILQTAGFSAAADATRVSVIIGVFKLLMTWVAVAKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFP-----------LVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKGLSLEEIE 553          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.531e-18
Identity = 64/203 (31.53%), Postives = 101/203 (49.75%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT-ANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            +G+   +  +GI  V+ YS  IF  AG+ S +   +AT G+G+ +     + T+L+DK GRR        GM   F L S+A  L   V    R    L  LS+V     V  FS+G+G I WV  SEI P+ +++   S+    N +++  V+M+  +     ++GG F ++  +      F    +PETKG  LEE++  F
Sbjct:  285 VGIHFFEHATGIEAVVLYSPRIFKKAGVVSKDKLLLATVGVGLTKAFFIIIATFLLDKVGRRKLLLTSTGGMV--FALTSLAVSLT-MVQRFGRLAWALS-LSIVSTYAFVAFFSIGLGPITWVYSSEIFPLRLRAQGASIGVAVNRIMNATVSMSFLSMTKAITTGGVFFVFAGIAVAAWWFFFFMLPETKGLPLEEMEKLF 483          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR5_RAT (Solute carrier family 2, facilitated glucose transporter member 5 OS=Rattus norvegicus GN=Slc2a5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.027e-17
Identity = 58/201 (28.86%), Postives = 105/201 (52.24%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNV--ATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            I L+  QQLSG+N + +Y+  I+ +AG+ S++V   T G G V V  T V  ++++  GRR       S    +  ++++A  L+  +S        +  +S+V ++  VI  ++G   IP + ++EI   + +  A  +    +WL ++IV +   F+       +F+I+ I+C  T  ++ + VPETKGR+  EI   F
Sbjct:  281 IVLMAGQQLSGVNAIYYYADQIYLSAGVKSNDVQYVTAGTGAVNVFMTMVTVFVVELWGRRNLLLIGFSTCLTACIVLTVALALQNTISW-------MPYVSIVCVIVYVIGHAVGPSPIPALFITEIFLQSSRPSAYMIGGSVHWLSNFIVGLIFPFIQVGLGPYSFIIFAIICLLTTIYIFMVVPETKGRTFVEINQIF 474          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR2_BOVIN (Solute carrier family 2, facilitated glucose transporter member 2 OS=Bos taurus GN=SLC2A2 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.342e-17
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = -3
Query:  369 QQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLI 854
            QQ SGING+ +YS++IF  AGIS    AT G+G V  V T V+ +L++KAGRR       SGM      +S+   L   +S+    +  +  +S+  +   V  F +G G IPW +++E      +  A ++A  +NW  ++I+ +   ++ D+     F +
Sbjct:  312 QQFSGINGIFYYSTSIFQTAGISQPVYATIGVGAVNTVFTAVSVFLVEKAGRRSLFLIGMSGMFVCAIFMSVGLVL---LSK----FPWMNYVSMTAIFLFVSFFEIGPGPIPWFMVAEFFSQGPRPAALAIAAFSNWTGNFIIALCFQYIADFCGPYVFFL 466          
The following BLAST results are available for this feature:
BLAST of CF835376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ITR2_YEAST1.433e-1929.90Myo-inositol transporter 2 OS=Saccharomyces cerevi... [more]
YNCC_BACSU2.445e-1927.88Putative metabolite transport protein yncC OS=Baci... [more]
YWTG_BACSU4.171e-1930.24Putative metabolite transport protein ywtG OS=Baci... [more]
MSSP2_ARATH5.447e-1933.97Monosaccharide-sensing protein 2 OS=Arabidopsis th... [more]
GLCP_SYNY37.114e-1930.65Glucose transport protein OS=Synechocystis sp. (st... [more]
CSBC_BACSU1.213e-1827.94Probable metabolite transport protein csbC OS=Baci... [more]
XYLL3_ARATH2.070e-1833.66D-xylose-proton symporter-like 3 OS=Arabidopsis th... [more]
PLT3_ARATH3.531e-1831.53Probable polyol transporter 3 OS=Arabidopsis thali... [more]
GTR5_RAT1.027e-1728.86Solute carrier family 2, facilitated glucose trans... [more]
GTR2_BOVIN1.342e-1731.48Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835376 ID=CF835376; Name=CF835376; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTCCCAAAACTGGAGATAATTATTTACTACCCCTTAA
TGTTCCAGTGAAAAAGAGTAATTTATCCATTGCCCTTTCCTTTTCCCCTT
CAACAACACCACAAAGCAACTGTCGTAGACCGCCCCTACAGATGATACAA
TGAACTATGGAGCAATGATGGAAGCAATTCGCACAAATAAAAGCGCATTG
ACATATACTTGGGAAGGATTAGGACACATGGGTGGAGAAGCTCTTTATTA
CAAATGCAAGCCAACAATTTTATCTGAAGGAAAACTGAATTTCTTCCAGA
CTTCTTCCTTTGGTTTCAGGAACCCAGAGAGACACAAAAGCAACAGTGAA
AGCACACACTATCCCGTATATCAAGAAGGTGCCTCCACTGCTCCAATCTA
ACAGAAAATTTGCAGTCATTGTGACAATCCACGATACCAGCCAGTTTGCC
AACGTTGCAACACTGCCAGCAAGGCTCTTGATATTCACTGGAAGTATCTC
GGACATTATAACCCAAGGAATAGCTCCAACTCCCAAAGAGAATGAAATCA
CTACAGTCACAAGACCGACAAGCGACAATATCCCCAATATGCTATAAAAG
CGAGAATCTTCTGACACAAAACCCTCCAAAAAGAATGCAATCGAAACAAG
GAAAAAACTAGCAGCCATTCCAGATGATGATATTAAAAGAAGAAGCCTGC
GGCCAGCTTTGTCCATCAACCATGTATTGACCCCAGTGGCAACAACCTGA
ACAACCCCAAGTCCAAATGTAGCAACGTTACTTGATGAAATCCCAGCGTT
AGCAAAAATGTTACTGGAATAGAATAAAACACCATTGATGCCACTGAGTT
GCTGAAGAACCAGTAATCCTATTCCTA
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