CF835376

Overview
NameCF835376
Unique NameCF835376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:941..1817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR7_HUMAN (Solute carrier family 2, facilitated glucose transporter member 7 OS=Homo sapiens GN=SLC2A7 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 52/201 (25.87%), Postives = 98/201 (48.76%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISS--SNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            I L+  QQLSGIN + +Y+  I+ +AG+ +  S   T G GVV +V T  +  L+++ GRR           ++  ++++    +  V E       L  L ++ +   +   S+G   +P V+ +EI   + +  A  V    +WL ++I+      + +     +F+I+  +C  T  ++ + +PETKG++  EI   F
Sbjct:  288 IVLMAGQQLSGINAINYYADTIYTSAGVEAAHSQYVTVGSGVVNIVMTITSAVLVERLGRRHLLLAGYGICGSACLVLTVVLLFQNRVPE-------LSYLGIICVFAYIAGHSIGPSPVPSVVRTEIFLQSSRRAAFMVDGAVHWLTNFIIGFLFPSIQEAIGAYSFIIFAGICLLTAIYIYVVIPETKGKTFVEINRIF 481          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR5_HUMAN (Solute carrier family 2, facilitated glucose transporter member 5 OS=Homo sapiens GN=SLC2A5 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 53/195 (27.18%), Postives = 99/195 (50.77%), Query Frame = -3
Query:  276 QQLSGINGVLFYSSNIFANAGISSSNV--ATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 854
            QQLSG+N + +Y+  I+ +AG+   +V   T G G V VV T    ++++  GRR         +  S  L++          +D+   S +  +S+V +++ VI  +LG   IP ++++EI   + +  A  V    +WL ++ V +   F+ +     +F+++ ++C  T  ++ L VPETK ++  EI   F
Sbjct:  288 QQLSGVNAIYYYADQIYLSAGVPEEHVQYVTAGTGAVNVVMTFCAVFVVELLGRRLLLL-----LGFSICLIACCVLTAALALQDT--VSWMPYISIVCVISYVIGHALGPSPIPALLITEIFLQSSRPSAFMVGGSVHWLSNFTVGLIFPFIQEGLGPYSFIVFAVICLLTTIYIFLIVPETKAKTFIEINQIF 475          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GALP_ECOLI (Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 59/203 (29.06%), Postives = 106/203 (52.22%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFG---LGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFV--SLW-VPETKGRSLEEIQ 875
            G+ L V+QQ +G+N +++Y+  IF  AG +++    +G   +G+  V+AT +   L+D+ GR+         MAA   ++     + G  S  +++++I  +L  +      + F++  G + WV+ SEI P+  +    + +T  NW+ + IV   A FL   ++ G    + +  A  V F+  +LW VPETK  SLE I+
Sbjct:  255 GVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHI-GIHSPSAQYFAIAMLLMFI------VGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIV--GATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIE 448          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GALP_ECOL6 (Galactose-proton symporter OS=Escherichia coli O6 GN=galP PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 59/203 (29.06%), Postives = 106/203 (52.22%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFG---LGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFV--SLW-VPETKGRSLEEIQ 875
            G+ L V+QQ +G+N +++Y+  IF  AG +++    +G   +G+  V+AT +   L+D+ GR+         MAA   ++     + G  S  +++++I  +L  +      + F++  G + WV+ SEI P+  +    + +T  NW+ + IV   A FL   ++ G    + +  A  V F+  +LW VPETK  SLE I+
Sbjct:  255 GVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHI-GIHSPSAQYFAIAMLLMFI------VGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIV--GATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIE 448          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR5_MOUSE (Solute carrier family 2, facilitated glucose transporter member 5 OS=Mus musculus GN=Slc2a5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.615e-16
Identity = 55/197 (27.92%), Postives = 101/197 (51.27%), Query Frame = -3
Query:  288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNV--ATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 872
            I L+  QQLSG+N + +Y+  I+ +AG+ S +V   T G G V V  T +  ++++  GRR       S    +  +++ A  L+  +S        +  +S+V ++  VI  +LG   IP ++++EI   + +  A  +    +WL ++ V +   F+       +F+I+  +C  T  ++ + VPETKGR+  EI
Sbjct:  281 IVLMAGQQLSGVNAIYYYADQIYLSAGVKSDDVQYVTAGTGAVNVFMTILTIFVVELWGRRFLLLVGFSTCLIACLVLTAALALQNTISW-------MPYISIVCVIVYVIGHALGPSPIPALLITEIFLQSSRPAAYMIGGSVHWLSNFTVGLIFPFIQMGLGPYSFIIFATICFLTTIYIFMVVPETKGRTFIEI 470          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR6_HUMAN (Solute carrier family 2, facilitated glucose transporter member 6 OS=Homo sapiens GN=SLC2A6 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.640e-15
Identity = 63/220 (28.64%), Postives = 109/220 (49.55%), Query Frame = -3
Query:  273 VLQQLSGINGVLFYSSNIFANAGI---SSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFL----------EGFVSED-----SRFYSILGILSLVGLVTV---VISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGG---TFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 860
            +LQQL+GI  +L Y  +IF +  +      + A   +G V++++  +    MD AGR+       + M A+   + +               G  SE          +  G L+LV L+     ++ +++G G I W++MSE+LP+  + +A  +  LA+WL +++  +T +FL   S+ G    F  +  +C  ++ F    VPETKGRSLE+I+  FR
Sbjct:  284 LLQQLTGITPILVYLQSIFDSTAVLLPPKDDAAI--VGAVRLLSVLIAALTMDLAGRKVLLFVSAAIMFAANLTLGLYIHFGPRPLSPNSTAGLESESWGDLAQPLAAPAGYLTLVPLLATMLFIMGYAVGWGPITWLLMSEVLPLRARGVASGLCVLASWLTAFV--LTKSFLPVVSTFGLQVPFFFFAAICLVSLVFTGCCVPETKGRSLEQIESFFR 499          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR5_BOVIN (Solute carrier family 2, facilitated glucose transporter member 5 OS=Bos taurus GN=SLC2A5 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15
Identity = 54/201 (26.87%), Postives = 103/201 (51.24%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNV--ATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            I L+  QQLSG+N + +Y+  I+ +AG++  +V   T G G V V+ T    ++++  GRR       S    +  +++ A  L+  +S        +  +S+  +++ VI  +LG   IP ++++EI   + +  A  VA   +WL ++ V +   F+       +F+I+ ++C  T  ++ L +PETK ++  EI   F
Sbjct:  282 IVLMAGQQLSGVNAIYYYADQIYLSAGVNEDDVQYVTAGTGAVNVLITVCAIFVVELMGRRFLLLLGFSVCFTACCVLTGALALQDVISW-------MPYVSIACVISYVIGHALGPSPIPALLVTEIFLQSSRPAAYMVAGTVHWLSNFTVGLVFPFIQVGLGAYSFVIFAVICLLTTVYIFLIIPETKSKTFIEINRIF 475          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 60/209 (28.71%), Postives = 103/209 (49.28%), Query Frame = -3
Query:  249 QQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIA----FFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR*N-CWLAFV 854
            QQL+GIN ++FY+  +F   G  S    ++    G+V V AT V+ + +DK GRR         M  S   V+ A    F ++G      ++Y+I+ +L +      V +F+   G + W++ SEI P+ I+S A S+    N + ++++      +L     G F+ +         FV L++PET+G  +EE+   +R +  W  FV
Sbjct:  292 QQLTGINVIMFYAPVLFQTIGFGSDAALISAVVTGLVNVGATVVSIYGVDKWGRRFLFLEGGFQMLISQVAVAAAIGAKFGVDGTPGVLPKWYAIVVVLFIC---IYVAAFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFLIAQVFLMMLCHLKFGLFIFFAFFVVVMSIFVYLFLPETRGVPIEEMNRVWRSHWYWSKFV 497          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = -3
Query:  285 SILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 593
            S  G  +L+GL   +I FS G+G +PW++ SEI P+  + + G +A  ANW+ + IV  +   L +   +  TFLI+G++    + FV + VPETKG  +EEI+
Sbjct:  450 SNFGWFALLGLGLYIIFFSPGMGTVPWIVNSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIALLFVMVCVPETKGMPMEEIE 553          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.140e-15
Identity = 60/198 (30.30%), Postives = 94/198 (47.47%), Query Frame = -3
Query:  288 IGLLVLQQLSGINGVLFYSSNIFANAGISS--SNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSI-LGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 872
            + L + QQ +GIN ++FY+  +F+  G  S  S  +    G V V++T V+ + +DK GRR        G+   F  V IA  L   V++ S   S    IL +V + T V +F+   G + W+I SE  P+  +S   SV    N L ++I+      +L     G F+ +         FV   +PETK   +EE+
Sbjct:  289 VALQIFQQCTGINAIMFYAPVLFSTLGFGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEA--GVQMFFSQVVIAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEM 484          
The following BLAST results are available for this feature:
BLAST of CF835376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
GTR7_HUMAN7.362e-1625.87Solute carrier family 2, facilitated glucose trans... [more]
GTR5_HUMAN7.362e-1627.18Solute carrier family 2, facilitated glucose trans... [more]
GALP_ECOLI7.362e-1629.06Galactose-proton symporter OS=Escherichia coli (st... [more]
GALP_ECOL67.362e-1629.06Galactose-proton symporter OS=Escherichia coli O6 ... [more]
GTR5_MOUSE9.615e-1627.92Solute carrier family 2, facilitated glucose trans... [more]
GTR6_HUMAN1.640e-1528.64Solute carrier family 2, facilitated glucose trans... [more]
GTR5_BOVIN3.654e-1526.87Solute carrier family 2, facilitated glucose trans... [more]
STP12_ARATH4.772e-1528.71Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
INT2_ARATH4.772e-1538.46Probable inositol transporter 2 OS=Arabidopsis tha... [more]
STP13_ARATH8.140e-1530.30Sugar transport protein 13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835376 ID=CF835376; Name=CF835376; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTCCCAAAACTGGAGATAATTATTTACTACCCCTTAA
TGTTCCAGTGAAAAAGAGTAATTTATCCATTGCCCTTTCCTTTTCCCCTT
CAACAACACCACAAAGCAACTGTCGTAGACCGCCCCTACAGATGATACAA
TGAACTATGGAGCAATGATGGAAGCAATTCGCACAAATAAAAGCGCATTG
ACATATACTTGGGAAGGATTAGGACACATGGGTGGAGAAGCTCTTTATTA
CAAATGCAAGCCAACAATTTTATCTGAAGGAAAACTGAATTTCTTCCAGA
CTTCTTCCTTTGGTTTCAGGAACCCAGAGAGACACAAAAGCAACAGTGAA
AGCACACACTATCCCGTATATCAAGAAGGTGCCTCCACTGCTCCAATCTA
ACAGAAAATTTGCAGTCATTGTGACAATCCACGATACCAGCCAGTTTGCC
AACGTTGCAACACTGCCAGCAAGGCTCTTGATATTCACTGGAAGTATCTC
GGACATTATAACCCAAGGAATAGCTCCAACTCCCAAAGAGAATGAAATCA
CTACAGTCACAAGACCGACAAGCGACAATATCCCCAATATGCTATAAAAG
CGAGAATCTTCTGACACAAAACCCTCCAAAAAGAATGCAATCGAAACAAG
GAAAAAACTAGCAGCCATTCCAGATGATGATATTAAAAGAAGAAGCCTGC
GGCCAGCTTTGTCCATCAACCATGTATTGACCCCAGTGGCAACAACCTGA
ACAACCCCAAGTCCAAATGTAGCAACGTTACTTGATGAAATCCCAGCGTT
AGCAAAAATGTTACTGGAATAGAATAAAACACCATTGATGCCACTGAGTT
GCTGAAGAACCAGTAATCCTATTCCTA
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