CF835377

Overview
NameCF835377
Unique NameCF835377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:1..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: PLST3_ARATH (Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.693e-16
Identity = 50/182 (27.47%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLKL---TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-----WRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            +L  + FG+  G  + T   I  DL     TI+E  +  +    GA +G++ SG +A+ +GR+ +  ++A+P I+G  + + ++    + +GR L G G+G+      +Y+ E++P  +RG+ GS  Q++  IG++ +   G+        WR+   +  +P  +L   +    ESP+WL K
Sbjct:   62 SLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLG-GAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFK 242          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  280 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------NWRVLAVLGVLPCTLLIPGLFFIPESP 756
            C Y SPT               ++F S   + A++ ++ +  +    GR+ S++   +    G LI  F+K    L +GR+L GFG+G  +  VP+Y++E+AP   RG+L    QLS+TIGI++A +L  F         WR+     V+P  ++  G   +P++P
Sbjct:   75 CQYDSPT--------------LTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTP 226          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: MSSP3_ARATH (Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 47/143 (32.87%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  358 SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL--GLFV----NWR-VLAVLGVLPCTLLIPGLFFIPESPRWL 765
            +++ +GA +    SG +++ +GR+  L++++V   +  +++ +S +   L   RLL+GFG+G+    VP+YI+E AP  +RG L +  Q   + G+ L+Y L  G+ +    +WR +L VL +      +   FF+PESPRWL
Sbjct:   50 AMSLIGATLITTFSGPVSDKVGRRSMLILSSVLYFLSSIVMFWSPNVYVLLFARLLDGFGIGLAVTLVPIYISETAPSEIRGLLNTFPQFCGSGGMFLSYCLVFGMSLQESPSWRLMLGVLSIPSIAYFVLAAFFLPESPRWL 192          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR2_MOUSE (Solute carrier family 2, facilitated glucose transporter member 2 OS=Mus musculus GN=Slc2a2 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 56/164 (34.15%), Postives = 92/164 (56.10%), Query Frame = 1
Query:  304 AEIISDL-KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS---SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM------LAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            A I++ L  L++S F+       VG MV +   G + + +GR  +++ A   ++ G L++  SK     + +  GR + G   G+IS  VP+YI EIAP  +RG+LG+++QL++  GI+      L+++LG   +W +L  L  +P  L    L F PESPR+L
Sbjct:   89 AHIVTMLWSLSVSSFA-------VGGMVASFFGGWLGDKLGRIKAMLAANSLSLTGALLMGCSKFGPAHALIIAGRSVSGLYCGLISGLVPMYIGEIAPTTLRGALGTLHQLALVTGILISQIAGLSFILGNQDHWHILLGLSAVPALLQCLLLLFCPESPRYL 245          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.593e-16
Identity = 46/142 (32.39%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  346 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-----WRVLAVLGVLPCTLLIPGLFFIPESP 756
            ++F S   + A+  ++ +  +    GRK S+++  V    G L+  F+     L +GRLL GFG+G  + +VP+Y++E+AP   RG+L    QLS+TIGI++A +L  F +     WR+     V+P  ++  G   +P++P
Sbjct:   83 TLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLFCAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNFFFSKISWGWRLSLGGAVVPALIITVGSLILPDTP 224          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: HXT2_YEAST (High-affinity glucose transporter HXT2 OS=Saccharomyces cerevisiae GN=HXT2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.835e-16
Identity = 49/143 (34.27%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  367 NVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            N+G   G +  G++ +  GR+  LM   +  I+G +I   S D  +  F+GR++ G GVG I+   P  I+E AP+++RG+  S  QL +T+GI L Y            V WRV   L       +I G+  +PESPR+L +
Sbjct:  114 NIGCAFGGLTLGRLGDMYGRRIGLMCVVLVYIVGIVIQIASSDKWYQYFIGRIISGMGVGGIAVLSPTLISETAPKHIRGTCVSFYQLMITLGIFLGYCTNYGTKDYSNSVQWRVPLGLNFAFAIFMIAGMLMVPESPRFLVE 256          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR2_RAT (Solute carrier family 2, facilitated glucose transporter member 2 OS=Rattus norvegicus GN=Slc2a2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.835e-16
Identity = 56/164 (34.15%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  304 AEIISDL-KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS---SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM------LAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            A I++ L  L++S F+       VG MV +   G + + +GR  +++ A   ++ G L++  SK     + +  GR + G   G+IS  VP+YI EIAP  +RG+LG+++QL++  GI+      L+++LG    W +L  L  +P  L    L F PESPR+L
Sbjct:   88 AHIVTMLWSLSVSSFA-------VGGMVASFFGGWLGDKLGRIKAMLAANSLSLTGALLMGCSKFGPAHALIIAGRSVSGLYCGLISGLVPMYIGEIAPTTLRGALGTLHQLALVTGILISQIAGLSFILGNQDYWHILLGLSAVPALLQCLLLLFCPESPRYL 244          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR12_HUMAN (Solute carrier family 2, facilitated glucose transporter member 12 OS=Homo sapiens GN=SLC2A12 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.835e-16
Identity = 52/177 (29.38%), Postives = 95/177 (53.67%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL-----LGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            A+  +  G+  G  S    +I + L L+  E  +  S   +GA++ ++  G + +  GR+ ++++++    +G L++  S   + L +GR+  G  + + S    VYIAEIAPQ+ RG L S+N+L + IGI+ AY+       +F  W+ +  L +    L    ++F+P SPR+L
Sbjct:   48 AVSGLLVGYELGIISGALLQIKTLLALSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGVLQAIAMYFLPPSPRFL 224          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: HXT10_YEAST (Hexose transporter HXT10 OS=Saccharomyces cerevisiae GN=HXT10 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.023e-15
Identity = 56/190 (29.47%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  271 GFTCGYSSPTQAEIIS--DLKLTISEFSIFGS-------------LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            GF  G+ + T +  I+  D K    E    GS             + N+G  +G +  G++ +  GRK  LM   +  ++G +I   S D  +  F+GR++ G GVG ++   P  I+EI+P+++RG+  S  QL +T+GI L Y            + WRV   L       ++ G+  +PESPR+L +
Sbjct:   60 GFIFGWDTGTISGFINQTDFKRRFGELQRDGSFQLSDVRTGLIVGIFNIGCALGGLTLGRLGDIYGRKIGLMCVILVYVVGIVIQIASSDKWYQYFIGRIVSGMGVGGVAVLSPTLISEISPKHLRGTCVSFYQLMITLGIFLGYCTNYGTKKYSNSIQWRVPLGLCFAWAIFMVIGMVMVPESPRYLVE 249          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR12_MACFA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Macaca fascicularis GN=SLC2A12 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.023e-15
Identity = 52/177 (29.38%), Postives = 95/177 (53.67%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL-----LGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            A+  +  G+  G  S    +I + L L+  E  +  S   +GA++ ++  G + +  GR+ ++++++    +G L++  S   + L +GR+  G  + + S    VYIAEIAPQ+ RG L S+N+L + IGI+ AY+       +F  W+ +  L +    L    ++F+P SPR+L
Sbjct:   52 AVSGLLVGYELGIISGALLQIKTLLTLSCHEQEMVVSSLLIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGILQAIAMYFLPPSPRFL 228          
The following BLAST results are available for this feature:
BLAST of CF835377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PLST3_ARATH2.693e-1627.47Probable plastidic glucose transporter 3 OS=Arabid... [more]
STP1_ARATH3.517e-1630.12Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
MSSP3_ARATH3.517e-1632.87Monosaccharide-sensing protein 3 OS=Arabidopsis th... [more]
GTR2_MOUSE3.517e-1634.15Solute carrier family 2, facilitated glucose trans... [more]
STP12_ARATH4.593e-1632.39Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
HXT2_YEAST7.835e-1634.27High-affinity glucose transporter HXT2 OS=Saccharo... [more]
GTR2_RAT7.835e-1634.15Solute carrier family 2, facilitated glucose trans... [more]
GTR12_HUMAN7.835e-1629.38Solute carrier family 2, facilitated glucose trans... [more]
HXT10_YEAST1.023e-1529.47Hexose transporter HXT10 OS=Saccharomyces cerevisi... [more]
GTR12_MACFA1.023e-1529.38Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835377 ID=CF835377; Name=CF835377; organism=Citrus sinensis; type=EST; length=771bp
ACGATCTCTTTGAAGCATTCCATCAAATCAATAATCATCCAAACACCAAC
ACCGTCTCCGTCGATCGTAAAGTAACGAGAGGCAATGAGTTTTAGAGACG
ATAATGAAGAAGCGGCTAATCTCCGTAAGCCGTTTCTCCACACGGGGAGT
TGGTACAAAATGGGCTCCAGACAGTCGAGTATCATGTCGTCATCGGCTCA
GATGCTTCGTGACGGCTCCGTCTCCGTTGTCTTTTGCGTCCTCGTCGTCG
CCCTCGGCCCCATCCAATTCGGTTTCACTTGTGGCTACTCTTCACCTACG
CAAGCCGAAATCATCAGCGATCTTAAACTTACAATTTCGGAGTTCTCTAT
ATTTGGCTCTTTAGCCAATGTGGGTGCTATGGTTGGTGCAATAGCTAGCG
GTCAGATAGCAGAGTACATTGGCCGAAAAGGGTCCCTAATGATTGCTGCT
GTTCCTAATATTATAGGATGGCTCATCATATCTTTCTCCAAAGATTCCTC
GTTTTTATTTATGGGAAGGTTGTTGGAAGGATTTGGTGTTGGTGTAATCT
CTTACACGGTGCCCGTGTACATAGCTGAGATAGCACCTCAAAATATGAGA
GGAAGTCTTGGATCTGTCAATCAGCTCTCAGTTACGATTGGAATTATGCT
GGCGTATCTATTGGGGCTTTTTGTCAATTGGAGAGTGCTTGCGGTTTTAG
GAGTTCTGCCATGTACATTGTTGATACCTGGATTGTTTTTCATACCAGAA
TCTCCTCGATGGCTGGCCAAA
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