CF835377

Overview
NameCF835377
Unique NameCF835377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:1..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR1_BOVIN (Solute carrier family 2, facilitated glucose transporter member 1 OS=Bos taurus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 56/195 (28.72%), Postives = 99/195 (50.77%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQ---------------AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            LG +QFG+  G  +  Q                E I    LT + +S+  ++ +VG M+G+ + G      GR+ S+++  +   +  +++ FSK       L +GR + G   G+ +  VP+Y+ E++P  +RG+LG+++QL + +GI++A + GL         W +L  +  +P  L    L F PESPR+L
Sbjct:   21 LGSLQFGYNTGVINAPQKVIEEFYNQTWVQRYGEPIPPATLT-TLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTELRGALGTLHQLGIVVGILIAQVFGLDSIMGNQELWPLLLSVIFIPALLQCILLPFCPESPRFL 214          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR12_MOUSE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Mus musculus GN=Slc2a12 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 54/177 (30.51%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-LFVN----WRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            A+  +  G+  G  S    +I + L LT  E  +  S   +GA + ++  G + +  GR+ ++++++    +G L++  S   + L MGR+  G  + + S    VYIAEIAPQ+ RG L S+N+L +  GI+ AY+    F N    W+ +  L +    L    ++F+P SPR+L
Sbjct:   52 AISGLLVGYELGLISGALLQIRTLLALTCHEQEMVVSSLLIGAFLASLTGGVLIDRYGRRLAIILSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVTGILFAYISNYAFANISNGWKYMFGLVIPLGVLQAIAMYFLPPSPRFL 228          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR1_MOUSE (Solute carrier family 2, facilitated glucose transporter member 1 OS=Mus musculus GN=Slc2a1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.280e-15
Identity = 56/195 (28.72%), Postives = 99/195 (50.77%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQ---------------AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            LG +QFG+  G  +  Q                E I    LT + +S+  ++ +VG M+G+ + G      GR+ S+++  +   +  +++ FSK       L +GR + G   G+ +  VP+Y+ E++P  +RG+LG+++QL + +GI++A + GL         W +L  +  +P  L    L F PESPR+L
Sbjct:   21 LGSLQFGYNTGVINAPQKVIEEFYNQTWNHRIGEPIPSTTLT-TLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVAAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFGLDSIMGNADLWPLLLSVIFIPALLQCILLPFCPESPRFL 214          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: RAG1_KLULA (Low-affinity glucose transporter OS=Kluyveromyces lactis GN=RAG1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15
Identity = 51/146 (34.93%), Postives = 77/146 (52.74%), Query Frame = 1
Query:  358 SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            S+ N+G  VG I    I +  GR+  L+   +  +IG +I   S D  +  F+GR++ G GVG I+   P+ I+E AP+++RG+L S  QL +T GI L Y            V WRV   L       ++ G+ F+PES R+L +
Sbjct:  118 SIFNIGCAVGGIVLSNIGDRWGRRIGLITVIIIYVIGIIIQIASVDKWYQYFIGRIISGLGVGGITVLSPMLISETAPKHLRGTLVSCYQLMITFGIFLGYCTNYGTKNYSNSVQWRVPLGLCFAWAIFMVLGMMFVPESARFLVE 263          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR7_RAT (Solute carrier family 2, facilitated glucose transporter member 7 OS=Rattus norvegicus GN=Slc2a7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15
Identity = 50/157 (31.85%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  319 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS---FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY------LLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRW 762
            D KL +  +S   S+  +G ++G++  G + +  GRKG+L+I  +  II  +++  SK +     +   R++ G   G+    +P+Y+ E+AP+N+RG +G+V ++ V +G+ LA       +LG    W VL  L  +P  L +  L F PESPR+
Sbjct:   69 DGKLMLLLWSCTVSMFPLGGLLGSLLVGLLVDSCGRKGTLLINNIFAIIPAILMGVSKVAKAFELIVFSRVVLGVCAGISYSALPMYLGELAPKNLRGMVGTVTEVFVIVGVFLAQIFSLQAILGNPAGWPVLLALTGVPALLQLLTLPFFPESPRY 225          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR12_XENLA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Xenopus laevis GN=slc2a12 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15
Identity = 52/181 (28.73%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV----PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-LFVN----WRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            A+  +  G+  G  S    ++ S L+LT  +  I  S   +GA+V ++  G + +  GR+ +++  ++     N++  +++S+      L  GR+  G  + + +    VYIAE++PQ+ RG L S+N+L +  GI+LAY+   LF +    W+ +  L      L    +FF+P SPR+L
Sbjct:   42 AISGLLVGYELGIISGALLQLQSLLELTCQQQEIVVSALLIGALVASLVGGCLIDLYGRRTTIIFTSILLVFANLLPVVVVSYGS----LIAGRIFIGVSISLSAIATCVYIAELSPQDKRGMLVSLNELMIVAGILLAYICNYLFASVNNGWKYMFGLITPLAALQAVAMFFLPRSPRFL 218          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 45/144 (31.25%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  346 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------NWRVLAVLGVLPCTLLIPGLFFIPESP 756
            ++F S   + A++ ++ +  I    GRK S++   V    G +I   +K    L +GR+L GFG+G  + +VP+Y++E+AP   RG+L    QLS+TIGI++A +L  F         WR+     ++P  ++  G   +P++P
Sbjct:   85 TMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTP 228          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: HXT16_YEAST (Hexose transporter HXT16 OS=Saccharomyces cerevisiae GN=HXT16 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 46/144 (31.94%), Postives = 82/144 (56.94%), Query Frame = 1
Query:  358 SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI-ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL-------LGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            ++ +VG  +G +A  ++A+ +GR+ +++I  +  ++G +I IS +      F+G+++ G G G  S   P+ ++EIAP ++RG L S+ QL++T GI L Y              WR+   L  L   ++I G+  +PESPR+L
Sbjct:  116 AMFSVGCSIGGVAFARLADTLGRRLAIVIVVLVYMVGAIIQISSNHKWYQYFVGKIIYGLGAGGCSVLCPMLLSEIAPTDLRGGLVSLYQLNMTFGIFLGYCSVYGTRKYSNTAQWRIPVGLCFLWALIIIVGMLLVPESPRYL 259          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: HXT15_YEAST (Hexose transporter HXT15 OS=Saccharomyces cerevisiae GN=HXT15 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 46/144 (31.94%), Postives = 82/144 (56.94%), Query Frame = 1
Query:  358 SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI-ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL-------LGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            ++ +VG  +G +A  ++A+ +GR+ +++I  +  ++G +I IS +      F+G+++ G G G  S   P+ ++EIAP ++RG L S+ QL++T GI L Y              WR+   L  L   ++I G+  +PESPR+L
Sbjct:  116 AMFSVGCSIGGVAFARLADTLGRRLAIVIVVLVYMVGAIIQISSNHKWYQYFVGKIIYGLGAGGCSVLCPMLLSEIAPTDLRGGLVSLYQLNMTFGIFLGYCSVYGTRKYSNTAQWRIPVGLCFLWALIIIVGMLLVPESPRYL 259          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR1_PIG (Solute carrier family 2, facilitated glucose transporter member 1 (Fragment) OS=Sus scrofa GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.633e-15
Identity = 51/162 (31.48%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  307 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            E IS   LT + +S+  ++ +VG M+G+ + G      GR+ S+++  +   I  +++ FSK       L +GR + G   G+ +  VP+Y+ E++P  +RG+LG+++QL + +GI++A + GL         W +L  +  +P  L    L F PESPR+L
Sbjct:   13 ESISPATLT-TLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFISAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFGLDSIMGNEELWPLLLSVIFIPALLQCVLLPFCPESPRFL 173          
The following BLAST results are available for this feature:
BLAST of CF835377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
GTR1_BOVIN1.745e-1528.72Solute carrier family 2, facilitated glucose trans... [more]
GTR12_MOUSE1.745e-1530.51Solute carrier family 2, facilitated glucose trans... [more]
GTR1_MOUSE2.280e-1528.72Solute carrier family 2, facilitated glucose trans... [more]
RAG1_KLULA2.977e-1534.93Low-affinity glucose transporter OS=Kluyveromyces ... [more]
GTR7_RAT5.078e-1531.85Solute carrier family 2, facilitated glucose trans... [more]
GTR12_XENLA5.078e-1528.73Solute carrier family 2, facilitated glucose trans... [more]
STC_RICCO6.633e-1531.25Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
HXT16_YEAST6.633e-1531.94Hexose transporter HXT16 OS=Saccharomyces cerevisi... [more]
HXT15_YEAST6.633e-1531.94Hexose transporter HXT15 OS=Saccharomyces cerevisi... [more]
GTR1_PIG6.633e-1531.48Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835377 ID=CF835377; Name=CF835377; organism=Citrus sinensis; type=EST; length=771bp
ACGATCTCTTTGAAGCATTCCATCAAATCAATAATCATCCAAACACCAAC
ACCGTCTCCGTCGATCGTAAAGTAACGAGAGGCAATGAGTTTTAGAGACG
ATAATGAAGAAGCGGCTAATCTCCGTAAGCCGTTTCTCCACACGGGGAGT
TGGTACAAAATGGGCTCCAGACAGTCGAGTATCATGTCGTCATCGGCTCA
GATGCTTCGTGACGGCTCCGTCTCCGTTGTCTTTTGCGTCCTCGTCGTCG
CCCTCGGCCCCATCCAATTCGGTTTCACTTGTGGCTACTCTTCACCTACG
CAAGCCGAAATCATCAGCGATCTTAAACTTACAATTTCGGAGTTCTCTAT
ATTTGGCTCTTTAGCCAATGTGGGTGCTATGGTTGGTGCAATAGCTAGCG
GTCAGATAGCAGAGTACATTGGCCGAAAAGGGTCCCTAATGATTGCTGCT
GTTCCTAATATTATAGGATGGCTCATCATATCTTTCTCCAAAGATTCCTC
GTTTTTATTTATGGGAAGGTTGTTGGAAGGATTTGGTGTTGGTGTAATCT
CTTACACGGTGCCCGTGTACATAGCTGAGATAGCACCTCAAAATATGAGA
GGAAGTCTTGGATCTGTCAATCAGCTCTCAGTTACGATTGGAATTATGCT
GGCGTATCTATTGGGGCTTTTTGTCAATTGGAGAGTGCTTGCGGTTTTAG
GAGTTCTGCCATGTACATTGTTGATACCTGGATTGTTTTTCATACCAGAA
TCTCCTCGATGGCTGGCCAAA
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