CF835377

Overview
NameCF835377
Unique NameCF835377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: RCO3_NEUCR (Probable glucose transporter rco-3 OS=Neurospora crassa GN=rco-3 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 47/151 (31.13%), Postives = 85/151 (56.29%), Query Frame = 1
Query:  340 EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM-------LAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            E ++  ++ + G  +GA+ +  + ++ GR+ SL+ A    +IG ++   + +   L  GR + G G+G++S  VP+Y +E+AP+ +RG+L    QLS+T+G++       L Y L     +RV   L +    +L  GL  +PE+PR+L K
Sbjct:   72 ESALIVAMLSAGTAIGALLAAPLGDHYGRRRSLIGAIGIFVIGAILQVCAYNIDLLVAGRTVAGVGIGIVSVLVPLYQSEMAPKWIRGTLVCTYQLSITMGLLAAAVVNILTYKLKTAAAYRVPIGLQLTWACVLALGLTVLPETPRYLIK 222          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: QAY_NEUCR (Quinate permease OS=Neurospora crassa GN=qa-y PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 50/149 (33.56%), Postives = 78/149 (52.35%), Query Frame = 1
Query:  358 SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF----LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN---------WRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            S+   GA  G + +   + ++GR+ SL+  +V  IIG  I+  +         +  GR+L G GVG  S  VP+YI+E+AP  +RG L  + +L   IG ++ + +   VN         W +   + ++P  LL  G F+IPESPRWL
Sbjct:   74 SVYQAGAFFGCLFAYATSYFLGRRKSLIAFSVVFIIGAAIMLAADGQGRGIDPIIAGRVLAGIGVGGASNMVPIYISELAPPAVRGRLVGIYELGWQIGGLVGFWINYGVNTTMAPTRSQWLIPFAVQLIPAGLLFLGSFWIPESPRWL 222          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: STP8_ARATH (Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14
Identity = 45/142 (31.69%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  349 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN------WRVLAVLGVLPCTLLIPGLFFIPESP 756
            +F S   + A+V +  +      +GR+ ++ +A++  +IG  + + + +   L +GR+L GFGVG  +  VP++++EIAP  +RG L  V QL VTIGI++A ++  F +      WR+      +P  +L+ G   I E+P
Sbjct:   82 LFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNYFTSSIHPYGWRIALGGAGIPALILLFGSLLICETP 223          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR10_XENLA (Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus laevis GN=slc2a10 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14
Identity = 45/176 (25.57%), Postives = 89/176 (50.57%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-----WRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            LG + FG+  G  S     + +  +LT  E     S    GA++ ++  G I +  GR+ S+M + +  + G +I+  +    +L +GR+  GF + + S    +Y++EI   + RG+L S+ +  +T+GI+++Y +  F++     W+ +  L ++P       + F+P  P  L
Sbjct:   17 LGGLIFGYELGIISGALLMLKTVFQLTCFEQEALVSAVLFGALLASLIGGFIIDRSGRRTSIMGSNLVVLAGSIILIATSSFWWLVVGRVTVGFAISISSMACCIYVSEIVRPHQRGTLVSLYETGITVGILISYAMNYFLSAVNDGWKYMFGLAIIPAAFQFIVILFLPSKPHTL 192          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GHT7_SCHPO (Probable high-affinity hexose transporter ght7 OS=Schizosaccharomyces pombe GN=ght7 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  307 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF--LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA---------YLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            +I +    + S   +   + NVG+  G + S  +A+ IG++ S+++     +IG +II  +   S+  + + ++  G  +G +S   P Y +E+AP  MRG++ +  QL +T+GI +A         Y  G    WR+   + +L   + + G+ F+PESPR+L
Sbjct:   14 QITNSYSYSSSRQGLITGMVNVGSFFGCLLSSPVADKIGKRLSIIVWTTVYLIG-IIIQVTTVPSWVQILVAKIWTGLSIGALSVITPGYQSEVAPAIMRGAIVTTYQLFITLGIFIAACINMGTHKYSHGTTAQWRISIGINLLWGIITLVGIIFLPESPRYL 176          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: XYLE_ECOLI (D-xylose-proton symporter OS=Escherichia coli (strain K12) GN=xylE PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 51/164 (31.10%), Postives = 78/164 (47.56%), Query Frame = 1
Query:  364 ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG-----WLIISFSK---DSSF----------LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            A +G ++G    G  +   GR+ SL IAAV   I      W  + F+    D++             + R++ G GVG+ S   P+YIAE+AP ++RG L S NQ ++  G +L Y +  F+             WR +     +P  L +  L+ +PESPRWL
Sbjct:   64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWL 227          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: XYLE_ECO57 (D-xylose-proton symporter OS=Escherichia coli O157:H7 GN=xylE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 51/164 (31.10%), Postives = 78/164 (47.56%), Query Frame = 1
Query:  364 ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG-----WLIISFSK---DSSF----------LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            A +G ++G    G  +   GR+ SL IAAV   I      W  + F+    D++             + R++ G GVG+ S   P+YIAE+AP ++RG L S NQ ++  G +L Y +  F+             WR +     +P  L +  L+ +PESPRWL
Sbjct:   64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWL 227          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: VPS73_YEAST (Vacuolar protein sorting-associated protein 73 OS=Saccharomyces cerevisiae GN=VPS73 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 47/152 (30.92%), Postives = 75/152 (49.34%), Query Frame = 1
Query:  322 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL----FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            + L   +  I  S+  +G ++G+  +  +A   GRK S +I    NI+G LII  S     L +GR+L G   G +   +P++I E+AP    G LGS+ Q+ + +G++L   + L       WR +     L   L     F + ESP+WL
Sbjct:   84 IPLNDEQIGIVTSVFCIGGILGSYFATSLANIYGRKFSSLINCTLNIVGSLIIFNSNSYRGLIIGRILVGISCGSLIVIIPLFIKEVAPSGWEGLLGSMTQICIRLGVLLTQGIALPLTDSYRWRWILFGSFLIAVLNFFMWFIVDESPKWL 235          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: SV2C_RAT (Synaptic vesicle glycoprotein 2C OS=Rattus norvegicus GN=Sv2c PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 57/181 (31.49%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  274 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS----------LGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            F  G+  P+     +DL +  S     GS+  +G MVGA   G +A+ +GRK SL+I    N     + SF +   F  + RLL GFG+G    TV  Y AE+  +  RG           +G +   ++   I+  Y           F +WRV  ++  LPC   +  L F+PESPR+L
Sbjct:  170 FVVGFVLPSAE---TDLCIPNSGSGWLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLLCRLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFL 347          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: STP7_ARATH (Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 1
Query:  286 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            Y    QA   +  K      + F S   +  +V  + +  I    GR+ S++   +  +IG  + + + + + L  GR++ G G+G  +  VP+Y++E+AP ++RG L  + QL+ TIGI  A ++           WR+   L   P  L+  G +F+PE+P  L +
Sbjct:   66 YEKKKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVE 233          
The following BLAST results are available for this feature:
BLAST of CF835377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RCO3_NEUCR3.292e-1431.13Probable glucose transporter rco-3 OS=Neurospora c... [more]
QAY_NEUCR3.292e-1433.56Quinate permease OS=Neurospora crassa GN=qa-y PE=3... [more]
STP8_ARATH4.299e-1431.69Sugar transport protein 8 OS=Arabidopsis thaliana ... [more]
GTR10_XENLA4.299e-1425.57Solute carrier family 2, facilitated glucose trans... [more]
GHT7_SCHPO4.299e-1428.05Probable high-affinity hexose transporter ght7 OS=... [more]
XYLE_ECOLI5.615e-1431.10D-xylose-proton symporter OS=Escherichia coli (str... [more]
XYLE_ECO575.615e-1431.10D-xylose-proton symporter OS=Escherichia coli O157... [more]
VPS73_YEAST5.615e-1430.92Vacuolar protein sorting-associated protein 73 OS=... [more]
SV2C_RAT5.615e-1431.49Synaptic vesicle glycoprotein 2C OS=Rattus norvegi... [more]
STP7_ARATH5.615e-1427.38Sugar transport protein 7 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835377 ID=CF835377; Name=CF835377; organism=Citrus sinensis; type=EST; length=771bp
ACGATCTCTTTGAAGCATTCCATCAAATCAATAATCATCCAAACACCAAC
ACCGTCTCCGTCGATCGTAAAGTAACGAGAGGCAATGAGTTTTAGAGACG
ATAATGAAGAAGCGGCTAATCTCCGTAAGCCGTTTCTCCACACGGGGAGT
TGGTACAAAATGGGCTCCAGACAGTCGAGTATCATGTCGTCATCGGCTCA
GATGCTTCGTGACGGCTCCGTCTCCGTTGTCTTTTGCGTCCTCGTCGTCG
CCCTCGGCCCCATCCAATTCGGTTTCACTTGTGGCTACTCTTCACCTACG
CAAGCCGAAATCATCAGCGATCTTAAACTTACAATTTCGGAGTTCTCTAT
ATTTGGCTCTTTAGCCAATGTGGGTGCTATGGTTGGTGCAATAGCTAGCG
GTCAGATAGCAGAGTACATTGGCCGAAAAGGGTCCCTAATGATTGCTGCT
GTTCCTAATATTATAGGATGGCTCATCATATCTTTCTCCAAAGATTCCTC
GTTTTTATTTATGGGAAGGTTGTTGGAAGGATTTGGTGTTGGTGTAATCT
CTTACACGGTGCCCGTGTACATAGCTGAGATAGCACCTCAAAATATGAGA
GGAAGTCTTGGATCTGTCAATCAGCTCTCAGTTACGATTGGAATTATGCT
GGCGTATCTATTGGGGCTTTTTGTCAATTGGAGAGTGCTTGCGGTTTTAG
GAGTTCTGCCATGTACATTGTTGATACCTGGATTGTTTTTCATACCAGAA
TCTCCTCGATGGCTGGCCAAA
back to top