CF835377

Overview
NameCF835377
Unique NameCF835377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: RGT2_YEAST (High-affinity glucose transporter RGT2 OS=Saccharomyces cerevisiae GN=RGT2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 49/152 (32.24%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  331 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA-AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------NWRVLAVLGVLPCTLLIPGLFFIPESPRW 762
            T S+ +I  S  ++G   GA+ +  I++  GRK ++M + AV   IG  +   S     L +GR++ G G+G+IS  VP+Y AE A +N+RG++ S  Q ++TIG++++  +           ++R+   L  +  ++L  G+ F+PESPR+
Sbjct:  141 TTSQIAILVSFLSLGTFFGALIAPYISDSYGRKPTIMFSTAVIFSIGNSLQVASGGLVLLIVGRVISGIGIGIISAVVPLYQAEAAQKNLRGAIISSYQWAITIGLLVSSAVSQGTHSKNGPSSYRIPIGLQYVWSSILAVGMIFLPESPRY 292          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR2_CHICK (Solute carrier family 2, facilitated glucose transporter member 2 OS=Gallus gallus GN=SLC2A2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 51/172 (29.65%), Postives = 91/172 (52.91%), Query Frame = 1
Query:  277 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            + G+  PT +  I  +  ++S      S+  VG MV +   G I + +GR  ++++  V +I G L++  +K       +  GR + G   G+ S  VP+Y++E++P  +RG+LG+++QL++  GI+++ +LGL         W +L  L  +   L    L   PESPR+L
Sbjct:   92 SAGFEDPTVSPHILTMYWSLSV-----SMFAVGGMVSSFTVGWIGDRLGRVKAMLVVNVLSIAGNLLMGLAKMGPSHILIIAGRAITGLYCGLSSGLVPMYVSEVSPTALRGALGTLHQLAIVTGILISQVLGLDFLLGNDELWPLLLGLSGVAALLQFFLLLLCPESPRYL 258          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GAL2_YEAST (Galactose transporter OS=Saccharomyces cerevisiae GN=GAL2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.615e-14
Identity = 51/146 (34.93%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  358 SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            ++ N+G   G I   +  +  GRK  L I     I+G +I   S +  +  F+GR++ G GVG I+   P+ I+EIAP+++RG+L S  QL +T GI L Y            V WRV   L       +I  L  +PESPR+L +
Sbjct:  126 AIFNIGCAFGGIILSKGGDMYGRKKGLSIVVSVYIVGIIIQIASINKWYQYFIGRIISGLGVGGIAVLCPMLISEIAPKHLRGTLVSCYQLMITAGIFLGYCTNYGTKSYSNSVQWRVPLGLCFAWSLFMIGALTLVPESPRYLCE 271          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: SV2C_MOUSE (Synaptic vesicle glycoprotein 2C OS=Mus musculus GN=Sv2c PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 57/181 (31.49%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  274 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS----------LGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            F  G+  P+     +DL +  S     GS+  +G MVGA   G +A+ +GRK SL+I    N     + SF +   F  + RLL GFG+G    TV  Y AE+  +  RG           +G +   ++   I+  Y           F +WRV  ++  LPC   +  L F+PESPR+L
Sbjct:  170 FVVGFVLPSAE---TDLCIPNSGSGWLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLVCRLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFL 347          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: STP6_ARATH (Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 45/142 (31.69%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  349 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESP 756
            +F S   + A+V +  +      +GR+ ++  A++  +IG  + + + +   L +GRL  GFGVG  +  VP++++EIAP  +RG L  V QL VTIGI++A ++  F        WR+      +P  +L+ G   I E+P
Sbjct:   81 LFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIVNYFTATVHPYGWRIALGGAGIPAVILLFGSLLIIETP 222          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: HXT13_YEAST (Hexose transporter HXT13 OS=Saccharomyces cerevisiae GN=HXT13 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  358 SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI-ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL-------LGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            ++ ++G  +G +   ++A+ +GR+ +++I  +  ++G +I IS +      F+G+++ G G G  S   P+ ++EIAP ++RG L S+ QL++T GI L Y              WRV   L  L   ++I G+  +PESPR+L
Sbjct:  113 AMFSIGCAIGGLIFARLADTLGRRLAIVIVVLVYMVGAIIQISSNHKWYQYFVGKIIYGLGAGGCSVLCPMLLSEIAPTDLRGGLVSLYQLNMTFGIFLGYCSVYGTRKYDNTAQWRVPLGLCFLWALIIIIGMLLVPESPRYL 256          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: SV2C_HUMAN (Synaptic vesicle glycoprotein 2C OS=Homo sapiens GN=SV2C PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 57/181 (31.49%), Postives = 83/181 (45.86%), Query Frame = 1
Query:  274 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS----------LGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            F  G+  P+     +DL +  S     GS+  +G MVGA   G +A+ +GRK SL+I    N     + SF +   F    RLL GFG+G    TV  Y AE+  +  RG           +G +   ++   I+  Y           F +WRV  ++  LPC   +  L F+PESPR+L
Sbjct:  170 FVVGFVLPSAE---TDLCIPNSGSGWLGSIVYLGMMVGAFFWGGLADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLFCRLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYASAMAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFL 347          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 47/148 (31.76%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  349 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            +F S   +  +     +      +GR+ +++IA V  IIG  + + ++D + L  GR+L G GVG  +  VP++++EIAP  +RG L  + QL+VTIGI+ A L+            WR+   L  +P  LL  G   + E+P  L +
Sbjct:   85 LFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVE 232          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: HXT17_YEAST (Hexose transporter HXT17 OS=Saccharomyces cerevisiae GN=HXT17 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.578e-14
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  358 SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI-ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL-------LGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            ++ ++G  +G +   ++A+ +GR+ +++I  +  ++G +I IS +      F+G+++ G G G  S   P+ ++EIAP ++RG L S+ QL++T GI L Y              WRV   L  L   ++I G+  +PESPR+L
Sbjct:  113 AMFSIGCAIGGLIFARLADTLGRRLAIVIVVLVYMVGAIIQISSNHKWYQYFVGKIIYGLGAGGCSVLCPMLLSEIAPTDLRGGLVSLYQLNMTFGIFLGYCSVYGTRKYDNTAQWRVPLGLCFLWTLIIIIGMLLVPESPRYL 256          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR10_XENTR (Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus tropicalis GN=slc2a10 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.251e-13
Identity = 44/176 (25.00%), Postives = 88/176 (50.00%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            LG I FG+  G  S     + +  +LT  E     S    GA++ ++  G I +  GR+ +++ + +  + G +I+  +    +L +GR+  GF + + S    +Y++EI   + RG L S+ +  +T+GI+++Y +  F+     +W+ +  L ++P       + F+P  P  L
Sbjct:   17 LGGIVFGYELGIISGALLVLKTVYQLTCFEQEALVSAVLFGALLASLIGGIIIDRWGRRTAILASNLVVLAGSIILIATSTFWWLIVGRVTIGFAISISSMACCIYVSEIVRPHQRGMLVSLYETGITVGILISYAMNYFLSGVNESWKYMFGLAIVPAAFQFISILFLPSKPHKL 192          
The following BLAST results are available for this feature:
BLAST of CF835377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RGT2_YEAST5.615e-1432.24High-affinity glucose transporter RGT2 OS=Saccharo... [more]
GTR2_CHICK5.615e-1429.65Solute carrier family 2, facilitated glucose trans... [more]
GAL2_YEAST5.615e-1434.93Galactose transporter OS=Saccharomyces cerevisiae ... [more]
SV2C_MOUSE7.333e-1431.49Synaptic vesicle glycoprotein 2C OS=Mus musculus G... [more]
STP6_ARATH7.333e-1431.69Sugar transport protein 6 OS=Arabidopsis thaliana ... [more]
HXT13_YEAST7.333e-1431.25Hexose transporter HXT13 OS=Saccharomyces cerevisi... [more]
SV2C_HUMAN9.578e-1431.49Synaptic vesicle glycoprotein 2C OS=Homo sapiens G... [more]
STP13_ARATH9.578e-1431.76Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
HXT17_YEAST9.578e-1431.25Hexose transporter HXT17 OS=Saccharomyces cerevisi... [more]
GTR10_XENTR1.251e-1325.00Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835377 ID=CF835377; Name=CF835377; organism=Citrus sinensis; type=EST; length=771bp
ACGATCTCTTTGAAGCATTCCATCAAATCAATAATCATCCAAACACCAAC
ACCGTCTCCGTCGATCGTAAAGTAACGAGAGGCAATGAGTTTTAGAGACG
ATAATGAAGAAGCGGCTAATCTCCGTAAGCCGTTTCTCCACACGGGGAGT
TGGTACAAAATGGGCTCCAGACAGTCGAGTATCATGTCGTCATCGGCTCA
GATGCTTCGTGACGGCTCCGTCTCCGTTGTCTTTTGCGTCCTCGTCGTCG
CCCTCGGCCCCATCCAATTCGGTTTCACTTGTGGCTACTCTTCACCTACG
CAAGCCGAAATCATCAGCGATCTTAAACTTACAATTTCGGAGTTCTCTAT
ATTTGGCTCTTTAGCCAATGTGGGTGCTATGGTTGGTGCAATAGCTAGCG
GTCAGATAGCAGAGTACATTGGCCGAAAAGGGTCCCTAATGATTGCTGCT
GTTCCTAATATTATAGGATGGCTCATCATATCTTTCTCCAAAGATTCCTC
GTTTTTATTTATGGGAAGGTTGTTGGAAGGATTTGGTGTTGGTGTAATCT
CTTACACGGTGCCCGTGTACATAGCTGAGATAGCACCTCAAAATATGAGA
GGAAGTCTTGGATCTGTCAATCAGCTCTCAGTTACGATTGGAATTATGCT
GGCGTATCTATTGGGGCTTTTTGTCAATTGGAGAGTGCTTGCGGTTTTAG
GAGTTCTGCCATGTACATTGTTGATACCTGGATTGTTTTTCATACCAGAA
TCTCCTCGATGGCTGGCCAAA
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