CF835381

Overview
NameCF835381
Unique NameCF835381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:959..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   93 AITCGQVSGSLPPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            A+TC  V+ +L PC+ +L+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 3
Query:   51 LLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGG-PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            L++ +L+      +AI C QV+  L  C+ +L++GG P PM CCNG+ SL AAA    DRQ ACNCLK  A +IP +N + A  LP  CGV+I    S + DC+ +
Sbjct:   14 LVITILLGIAYHGEAIACPQVNMYLAQCLPYLKAGGNPSPM-CCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.933e-16
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   54 LLCMLVTGPLSAQ---AITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            +L M+V   L      AITC  V+G+L PC+ +LRSGG     CC G + L  A RT  DR+TAC C K AA  +  +  + A+ LPG CG+S    I+ + +C+ +
Sbjct:   10 ILAMIVMAQLMVHPSVAITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQL-KVRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.708e-14
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 3
Query:   96 ITCGQVSGSLPPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            + CGQV+ SL  CI FL  G   P   CC GV++L   A T+ DR+ AC C+K AA   P++  + A+ LP  CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.913e-14
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 3
Query:   24 MAALKLVSALLLCMLVTGPLSAQ-------AITCGQVSGSLPPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVS-IPYKISTSTDCSKV 365
            MA  K+V A+ +  LV   ++         AI+C QV  ++ PC  +L      P   CC  +R L++  + TPDRQ  CNCLK  A+S   + L  AA LPG C V+ +   IS + DCSKV
Sbjct:    1 MAVKKMVEAVFVVGLVVTMMNVWGAVPVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   84 SAQAITCGQVSGSLPPCIGFLRSG-GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            S  AI+C  V   L PC+ +L SG G  P  CC+GV+SL AA  T+ D++ AC C+K  A S+ ++    A  L   CG S+P   S + DC+ V
Sbjct:   22 SESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.073e-12
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 3
Query:   96 ITCGQVSGSLPPCIGFLRSGGPIP-MPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            + CGQV+ +L  C+ FL      P + CC GV  L   A T  D++ AC C+K AA   P++  + A+ LP  CGV I   IS +T+C ++
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
The following BLAST results are available for this feature:
BLAST of CF835381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_AMAHP7.407e-1846.81Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPB_ARATH9.674e-1844.34Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP1_HELAN6.933e-1640.19Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPA_RICCO1.708e-1442.86Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP_PINTA2.913e-1438.21Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTP8_ARATH2.466e-1341.05Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTPB_RICCO6.073e-1238.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835381 ID=CF835381; Name=CF835381; organism=Citrus sinensis; type=EST; length=623bp
GAAAATCTCAGCAGTAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCT
TTGCTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAAC
ATGTGGGCAGGTGAGTGGCTCATTGCCACCATGCATCGGTTTCTTGAGAT
CGGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAAC
GCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAA
GCAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTC
TTCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACT
GACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGT
TTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGT
CCGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGC
CCTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAG
TTTGTGTCTATTCTGTTTATTAAATGAAATCTTGCCTTGTGTTCAGTTTA
ACAACTTAAAAAAAAAAAAAAAA
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