CF835382

Overview
NameCF835382
Unique NameCF835382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9673 contig Csv1_Contig9673:155..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 60/179 (33.52%), Postives = 93/179 (51.96%), Query Frame = 2
Query:   92 AELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 619
            AE  DV  +V+T I    + G L VGN NG++LP    D+EL  L N+L      + V R +   +ALGN + CN+   +A + L+R+    I++ LGVE   + +    + GS    +++GG++HP  S ++  EL  + +V     TVN G   I +GL  N+     G  TT  E+
Sbjct:   40 AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANNKGIIVGEYTTGPEI 215          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METVS (Translation initiation factor 6 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eif6 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 63/183 (34.43%), Postives = 100/183 (54.64%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 646
            IPV + +I  + +IG LCVGN NGLL+P+  T +E+  +++ L +    V +++++ + +A GN I  N+   +    L +   ++I DVLGVE      A    VGS    +++G LVHP T   +L+ ++ +L+V  V  GT NRG   +G+ +  N   A  G DT+  EL  IE    L
Sbjct:   44 IPVTQLNISNSSLIGSLCVGNSNGLLVPNIVTSKEIALIKDFLKENSLDVNLEKLKAKNTAFGNLILTNNKGCIISEEL-QNFRKVIEDVLGVESGVGNYASLPTVGSNGVATDKGCLVHPLTDELELEWITDVLKVDYVGRGTANRGVTSVGSCILANTKGAVIGGDTSGPELLKIEEALDL 225          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METMP (Translation initiation factor 6 OS=Methanococcus maripaludis GN=eif6 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 65/183 (35.52%), Postives = 98/183 (53.55%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 646
            IP  + +I  + +IG LCVGN NGLL+P+ TT++EL+ ++  L +    V ++R++ + +A GN I  N+   +    L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N   A  G DT+  E+  IE    L
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPNITTEKELELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANTKGAVVGGDTSGPEILKIEEALDL 225          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 646
            IP  + +I  + +IG LCVGN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +    L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N   A  G DT+  E+  IE    L
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDTSGPEILKIEEALDL 225          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 64/192 (33.33%), Postives = 104/192 (54.17%), Query Frame = 2
Query:   68 ESFYSTFQAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVE-VFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVF 640
            +    TF+ E      +++T+I  + +IG    GN N +LLP    D+E++ +++   D V V+ ++ R +ALGN I  N + AL +  L     + I + L ++ + + ++A  I VGS    +++ GLVH  T+ E+LD+LS L +V +  GTVN GS  I +GL  N      GS TT  E+  I+  F
Sbjct:   37 QKIQETFKTE------IIQTTIAKSFLIGIFVAGNNNVILLPRNVDDEEVKKIKDIARD-VRVEILDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIANRNGVLVGSATTGPEILRIQRAF 221          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_SULAC (Translation initiation factor 6 OS=Sulfolobus acidocaldarius GN=eif6 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 60/176 (34.09%), Postives = 94/176 (53.41%), Query Frame = 2
Query:  116 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEV-FRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVF 640
            +++T+I  + ++G L  GN + +LLP T    E++ ++    D V V+ ++ R +ALGN I  N H AL +  L       +   L ++   + T+A  I VGS    +++ GLVH   + E+L +LS L +V L +GTVN GS  I +GL  N      GS TT  E+  I+  F
Sbjct:   47 IIQTTISKSVLVGILVTGNNDVILLPRTALADEIKVIKEQAKD-VRVEVVDIRPTALGNIILSNTHGALIYQDLSEAEINKVKKALQIDTAIKGTIANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVANRNGVLVGSSTTGAEILRIQRAF 221          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METM7 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 646
            IP  + +I  + +IG LCVGN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +    L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N   A  G DT+  E+  IE    L
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDTSGPEILKIEEALDL 225          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 56/169 (33.14%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  125 TSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            T++GG   +G L  GN+NG+L+    T++E   +  +   +V    +   ++A GN +  ND+ A  H  L RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +   L V    GT+N G+ +IG+GL   D     G DTT  EL  IE
Sbjct:   48 TTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATDEGYVVGEDTTGPELGRIE 214          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 64/213 (30.05%), Postives = 108/213 (50.70%), Query Frame = 2
Query:   11 VAFFSKLTNAFCLVAIGGSESFYSTFQAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVF 640
            +  ++++     +V +   + F     AE  DV  V++T + G+ +IG L  GN  G ++     D EL+ L+    D ++   + E ++A GN I  ND  A+ H  +     E++AD L V++   + AG   VG  C+ +N G L+   ++ E++++L   +    V +  G+VN GS +IG GL +N      G+ TT  EL  IE VF
Sbjct:   13 IGVYARVFEDLAVVPVEAPKEFRDKI-AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQ-EYGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLINSKGYLAGNATTGYELGRIEDVF 219          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 64/211 (30.33%), Postives = 105/211 (49.76%), Query Frame = 2
Query:   11 VAFFSKLTNAFCLVAIGGSESFYSTFQAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            +   S  T  F L      E+  + F+  L   +PV   +IG + +IG LC  N  G++LP  T ++E   L + L +    ++V+ I  + +A GN I  ND   +    L  +  +   D+  VEV  + +A    VGS    +N+G LVHP T+ E+L+ +  +L++  +  GT ++G+  +GA +  N   A  G DTT  E+  IE
Sbjct:   13 IGVLSLSTEKFGLAPYFAEENTINKFKKVLD--VPVKALNIGNSSLIGALCCANSYGIILPPFTLNREKTILSDFLKENDIDIIVKEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVANSNGAVIGGDTTGPEMLKIE 220          
The following BLAST results are available for this feature:
BLAST of CF835382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_STAMF4.611e-1933.52Translation initiation factor 6 OS=Staphylothermus... [more]
IF6_METVS4.611e-1934.43Translation initiation factor 6 OS=Methanococcus v... [more]
IF6_METMP6.022e-1935.52Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METM67.865e-1934.97Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_SULTO1.027e-1833.33Translation initiation factor 6 OS=Sulfolobus toko... [more]
IF6_SULAC1.342e-1834.09Translation initiation factor 6 OS=Sulfolobus acid... [more]
IF6_METM71.342e-1834.97Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_HALLT1.752e-1833.14Translation initiation factor 6 OS=Halorubrum lacu... [more]
IF6_METLZ2.288e-1830.05Translation initiation factor 6 OS=Methanocorpuscu... [more]
IF6_META32.989e-1830.33Translation initiation factor 6 OS=Methanococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835382 ID=CF835382; Name=CF835382; organism=Citrus sinensis; type=EST; length=676bp
TTCGTGTGAGGTTGCTTTTTTTTCCAAGCTCACTAATGCTTTTTGCTTGG
TCGCAATTGGAGGTTCTGAGAGCTTCTACAGCACATTTCAAGCGGAGTTA
GCAGATGTTATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTAT
CGGGCGGCTTTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAA
CCACAGACCAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTT
GTTGTCCAGCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGC
ATGCAATGACCATGTTGCTCTTGCACACACATATCTTGACAGGGAAACGG
AGGAAATTATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTT
GCCGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGG
CTTGGTCCACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACAC
TCTTGCAAGTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTG
ATAGGTGCTGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGTCAGA
CACCACGGCAACCGAACTCTCTGTTATTGAGAGCGTTTTCAAGTTGAGGG
AAGCTCAACCAAATGCCATTGTGGAT
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