CF835385

Overview
NameCF835385
Unique NameCF835385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9884 contig Csv1_Contig9884:19..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.151e-37
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 2
Query:  500 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNG LAMFSMFGFF
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230          
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.151e-37
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 2
Query:  500 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNG LAMFSMFGFF
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230          
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.151e-37
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 2
Query:  500 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNG LAMFSMFGFF
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 79          
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.151e-37
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 2
Query:  500 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNG LAMFSMFGFF
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 228          
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.151e-37
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 2
Query:  500 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNG LAMFSMFGFF
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 228          
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 74/87 (85.06%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  479 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGFF 736
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKNG LAMFSMFGFF
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFF 87          
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 79/216 (36.57%), Postives = 105/216 (48.61%), Query Frame = 2
Query:   92 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGF 733
            VG    LAPS     +G       T S  V+  + W+            G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKNG LAM +  GF
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGF 205          
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 70/169 (41.42%), Postives = 91/169 (53.85%), Query Frame = 2
Query:  233 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGTLAMFSMFGF 733
            + G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKNG LA+ ++ GF
Sbjct:   50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGF 206          
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 66/169 (39.05%), Postives = 90/169 (53.25%), Query Frame = 2
Query:  245 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGTLAMFSMFG 730
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNG LAM ++ G
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
BLAST of CF835385 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.107e-23
Identity = 72/195 (36.92%), Postives = 97/195 (49.74%), Query Frame = 2
Query:  167 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGTLAMFSMFG 730
            GS+SV+  +    PDR  +       PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNG LAM ++ G
Sbjct:   50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMG 235          
The following BLAST results are available for this feature:
BLAST of CF835385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2F_SOLLC1.151e-3794.94Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.151e-3794.94Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.151e-3794.94Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.151e-3794.94Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.151e-3794.94Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA1.837e-3585.06Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU2.251e-2536.57Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.459e-2441.42Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC7.242e-2439.05Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY2.107e-2336.92Chlorophyll a-b binding protein, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835385 ID=CF835385; Name=CF835385; organism=Citrus sinensis; type=EST; length=737bp
TGCTTACACAGCTCCTATTGCTTACCCAGCTTCTGCTTCTCAATTAAATT
CCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAAG
GCCGTGAACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCAT
CTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGT
ACGGCCCGGACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCA
AGCTACTTGACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCCGG
GCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCA
TCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAG
CTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGC
GGGAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAA
GCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTC
TTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGA
AGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGG
CTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAAT
GGAACGTTGGCTATGTTCTCCATGTTTGGTTTCTTCG
back to top