CF835389

Overview
NameCF835389
Unique NameCF835389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835389_ssr519 microsatellite CF835389_ssr519:519..530. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1268 contig Csv1_Contig1268:74..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835389 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39
Identity = 71/107 (66.36%), Postives = 84/107 (78.50%), Query Frame = 3
Query:  138 EQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 458
            + I WDL  AS FCATWDA+KPL+WR KYGWTAFC   GP GQ +CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:    1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
BLAST of CF835389 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.683e-31
Identity = 59/87 (67.82%), Postives = 72/87 (82.76%), Query Frame = 3
Query:  198 KPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 458
            KP +WR KYGWTAFC   GP G+ +CG+CLRVTN+GTGA  IVRIVDQC+NGGLDLD GVF ++DT+G GYQQG L V+Y+FV+C +
Sbjct:    1 KPYSWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of CF835389 vs. ExPASy Swiss-Prot
Match: CHAL_BRARA (Chitin-binding allergen Bra r 2 (Fragments) OS=Brassica rapa PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  117 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGT 308
            TYH Y+P Q  WDL A SA+C+TWDA+KP +WR  YGWTAFC   GP       RCLR   + T
Sbjct:   35 TYHYYNPAQNNWDLRAVSAYCSTWDADKPYSWR--YGWTAFCGPAGP-------RCLRTNAAVT 89          
The following BLAST results are available for this feature:
BLAST of CF835389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4_PRUPE2.864e-3966.36Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
WIN_SOYBN1.683e-3167.82Wound-induced protein (Fragment) OS=Glycine max GN... [more]
CHAL_BRARA1.582e-1354.69Chitin-binding allergen Bra r 2 (Fragments) OS=Bra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835389 ID=CF835389; Name=CF835389; organism=Citrus sinensis; type=EST; length=652bp
GTTAAGCTTAGACACATTAAGAGAAAAATATGGGGAGGTTCGGTCTCTGT
GTGATTCTGTCAGTTTGTCTACTGGTGGCAGCTGCTTCTGCCCAAAGTGC
TTCTAATGTGAGAGCCACGTATCATCTCTACCACCCTGAGCAAATTGGAT
GGGACTTGACGGCAGCGAGCGCTTTCTGCGCAACATGGGATGCCAACAAG
CCCTTGGCCTGGCGCCAGAAATATGGCTGGACTGCTTTCTGTCATTCGGG
CGGACCCATTGGACAAGCTGCTTGTGGCAGGTGCTTAAGGGTCACAAACA
GTGGTACAGGAGCCCAACAAATTGTGAGAATTGTTGATCAGTGTGCCAAT
GGAGGCTTAGATTTGGACGAAGGAGTGTTCAAGAAATTGGACACCAATGG
AATAGGCTATCAACAAGGCTTCCTTACTGTCAGCTACGAGTTTGTGAACT
GCAATGATTAAAGCACCATCTATAATTCCATGATCGATCGAAGCTTAATG
CTGTAATAGGGTTAATTTATTAATTAATTATCCCTCTATATACTTAGTTC
ATAAATAAAATAAAACTTCTGATGAAGTATCAAGAAGTGCTCATGGGCAC
TACAGTTATGTAATAAAAGTTTCCTTTTTTTATCCCAAAAAAAAAAAAAA
AA
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