CF835397
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.869e-34 Identity = 67/144 (46.53%), Postives = 100/144 (69.44%), Query Frame = 2 Query: 2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427 PGDN+GFNV+ V D+KRG VA ++ + P R F +Q+I++NHP I GY PVL HT+ +AV+F +L+ K+D R+G +E+ P+F+K GD+ +V + PTK MV+E + P +GRFA+RDM QTVA G++ S++K + Sbjct: 285 PGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.163e-34 Identity = 68/142 (47.89%), Postives = 98/142 (69.01%), Query Frame = 2 Query: 2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427 PGDN+GFNV+ V KD+KRG V ++ + P A +FT+Q++++ HP + +GY PV HT+ IA F+E+ K++ +G+ LE+ P FLK GDA +VK+IPTKPMV+E+ + P LGRFA+RDM TVA G+ V K+ Sbjct: 287 PGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.163e-34 Identity = 65/139 (46.76%), Postives = 99/139 (71.22%), Query Frame = 2 Query: 2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 418 PGDN+GFNV+ ++ KD++RG VA + D P A FT+++ ++ HP I GY PV+ HT+ IA + +E+ K+D R+G+ +EK P+FLK GDA +VK P KPMV+E +S++P LGRFA+RDM +T+ +G++ V+ Sbjct: 293 PGDNIGFNVRGISKKDIRRGDVAGHV-DKPPTVAEEFTARIFVIWHPSAITVGYTPVIHAHTASIAARITEIQAKLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDVK 430
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.101e-34 Identity = 67/139 (48.20%), Postives = 100/139 (71.94%), Query Frame = 2 Query: 2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 418 PGDN+GFNV+ V+ +D++RG VA + D+P A FT++V I+ HP I GY PV+ HT+ +A + E+ K+D R+GK +E+ P+F+K GDA +V+ P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+ V+ Sbjct: 292 PGDNIGFNVRGVSKRDIRRGDVAGHL-DNPPTVAEEFTARVFIIWHPTAITVGYTPVIHIHTASVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.101e-34 Identity = 67/134 (50.00%), Postives = 94/134 (70.15%), Query Frame = 2 Query: 2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 403 PGDN+GFNV+ V D++RG VA + D+P + A FT+Q++++ HPG I GY PV CHT+ +A F ELV K++ +G+ E+ P FLK G+A +VK+ PTKP+V+E D P +GRFA+RDM QTVA G+ Sbjct: 273 PGDNIGFNVRGVGKNDIRRGDVAGHL-DNPPKVAKEFTAQIVVLQHPGVITVGYTPVFHCHTAQVACTFLELVQKMNPATGQVEEENPDFLKTGNAAVVKVKPTKPLVIEKIKDIPHMGRFAIRDMGQTVAAGM 405
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33 Identity = 72/141 (51.06%), Postives = 98/141 (69.50%), Query Frame = 2 Query: 2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 424 PGDN+GFNV+ V KD+KRG VA S +P A FT+QVI++ HP + GY PVL HT+ IA + SE+ ++ID ++GKE EK P+F+K GD+ +VK P K +V E F ++P LGRFA+RDM +TV VGVI V+ + Sbjct: 291 PGDNIGFNVRGVEKKDVKRGDVAG-SVQNPPTVADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDVKPR 430
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33 Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 2 Query: 2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427 PGDN+GFNV+ V KD+KRG V ++ + P A +FT+Q++++ HP + GY PV HT+ IA F+E+ K++ +G+ LE+ P FLK GDA +VK+IPTKPMV+E+ + P LGRFA+RDM TVA G+ V K+ Sbjct: 287 PGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33 Identity = 70/141 (49.65%), Postives = 94/141 (66.67%), Query Frame = 2 Query: 2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 424 PGDNVGFNV+ +A D++RG V ++ P A FT+QV+++ HP + GY PV CHTS A F+EL K+D RSG+ E+ P FLK GDA + + PT+P+V+ET + P LGRFAVRDM TVA G++ SV+ K Sbjct: 283 PGDNVGFNVRGIAKNDVRRGDVCGPIENPPT-VAEEFTAQVVVLQHPSVLSVGYTPVFHCHTSQTACMFTELNKKLDPRSGQVKEENPAFLKAGDAAICTITPTRPLVIETAKELPQLGRFAVRDMGMTVAAGLVLSVKAK 422
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33 Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = 2 Query: 2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 403 PGDN+GFNV+ V D++RG VA + D PA A F +Q++++ HPG I GY PV CHTS +A F EL K+D +G+ E+ P FLK G+A VK+ PTKPMV+E P +GRFA+RDM QTVA G+ Sbjct: 273 PGDNIGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33 Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 2 Query: 2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427 PGDN+GFNV+ V KD+KRG V ++ + P AA+FT+Q++++ HP + GY PV HT+ IA F EL K++ +G+ LE+ P FLK GDA +VK++PTKP+V+E+ + P LGRFA+RDM TVA G+ V K+ Sbjct: 287 PGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427 The following BLAST results are available for this feature:
BLAST of CF835397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 171
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835397 ID=CF835397; Name=CF835397; organism=Citrus sinensis; type=EST; length=702bpback to top |