CF835397

Overview
NameCF835397
Unique NameCF835397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.869e-34
Identity = 67/144 (46.53%), Postives = 100/144 (69.44%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427
            PGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ S++K +
Sbjct:  285 PGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.163e-34
Identity = 68/142 (47.89%), Postives = 98/142 (69.01%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427
            PGDN+GFNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  + +GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  287 PGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.163e-34
Identity = 65/139 (46.76%), Postives = 99/139 (71.22%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 418
            PGDN+GFNV+ ++ KD++RG VA +  D P   A  FT+++ ++ HP  I  GY PV+  HT+ IA + +E+  K+D R+G+ +EK P+FLK GDA +VK  P KPMV+E +S++P LGRFA+RDM +T+ +G++  V+
Sbjct:  293 PGDNIGFNVRGISKKDIRRGDVAGHV-DKPPTVAEEFTARIFVIWHPSAITVGYTPVIHAHTASIAARITEIQAKLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDVK 430          
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.101e-34
Identity = 67/139 (48.20%), Postives = 100/139 (71.94%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 418
            PGDN+GFNV+ V+ +D++RG VA +  D+P   A  FT++V I+ HP  I  GY PV+  HT+ +A +  E+  K+D R+GK +E+ P+F+K GDA +V+  P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+  V+
Sbjct:  292 PGDNIGFNVRGVSKRDIRRGDVAGHL-DNPPTVAEEFTARVFIIWHPTAITVGYTPVIHIHTASVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.101e-34
Identity = 67/134 (50.00%), Postives = 94/134 (70.15%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 403
            PGDN+GFNV+ V   D++RG VA +  D+P + A  FT+Q++++ HPG I  GY PV  CHT+ +A  F ELV K++  +G+  E+ P FLK G+A +VK+ PTKP+V+E   D P +GRFA+RDM QTVA G+
Sbjct:  273 PGDNIGFNVRGVGKNDIRRGDVAGHL-DNPPKVAKEFTAQIVVLQHPGVITVGYTPVFHCHTAQVACTFLELVQKMNPATGQVEEENPDFLKTGNAAVVKVKPTKPLVIEKIKDIPHMGRFAIRDMGQTVAAGM 405          
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33
Identity = 72/141 (51.06%), Postives = 98/141 (69.50%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 424
            PGDN+GFNV+ V  KD+KRG VA  S  +P   A  FT+QVI++ HP  +  GY PVL  HT+ IA + SE+ ++ID ++GKE EK P+F+K GD+ +VK  P K +V E F ++P LGRFA+RDM +TV VGVI  V+ +
Sbjct:  291 PGDNIGFNVRGVEKKDVKRGDVAG-SVQNPPTVADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDVKPR 430          
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427
            PGDN+GFNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  +  GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  287 PGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33
Identity = 70/141 (49.65%), Postives = 94/141 (66.67%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 424
            PGDNVGFNV+ +A  D++RG V    ++ P   A  FT+QV+++ HP  +  GY PV  CHTS  A  F+EL  K+D RSG+  E+ P FLK GDA +  + PT+P+V+ET  + P LGRFAVRDM  TVA G++ SV+ K
Sbjct:  283 PGDNVGFNVRGIAKNDVRRGDVCGPIENPPT-VAEEFTAQVVVLQHPSVLSVGYTPVFHCHTSQTACMFTELNKKLDPRSGQVKEENPAFLKAGDAAICTITPTRPLVIETAKELPQLGRFAVRDMGMTVAAGLVLSVKAK 422          
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 403
            PGDN+GFNV+ V   D++RG VA +  D PA  A  F +Q++++ HPG I  GY PV  CHTS +A  F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+
Sbjct:  273 PGDNIGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405          
BLAST of CF835397 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.066e-33
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIENGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427
            PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  287 PGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
The following BLAST results are available for this feature:
BLAST of CF835397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_THEGJ1.869e-3446.53Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_METVA4.163e-3447.89Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_HYPBU4.163e-3446.76Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_STAMF7.101e-3448.20Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_METTH7.101e-3450.00Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_SULAC1.211e-3351.06Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_METVS1.211e-3347.89Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METLZ1.211e-3349.65Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_METS32.066e-3350.75Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_METM72.066e-3347.89Elongation factor 1-alpha OS=Methanococcus maripal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835397 ID=CF835397; Name=CF835397; organism=Citrus sinensis; type=EST; length=702bp
TCCGGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATC
TCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAA
GCTGCCAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAAAT
TGAAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCTG
TCAAGTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCTGGCAAGGAG
CTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAA
GATGATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGACTACCCAC
CCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTAGCTGTTGGT
GTGATCAAGAGTGTTGAAAAGAAGGATCCATCGGGTGCCAAGGTCACCAA
GTCTGCTGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAG
TTAGCTTTTATTTTCTCTGTTTATGCTATTTTTGTCATGTTTTAGTTTGT
TTTACGGTAGACTTCATTTTAATTCTCTGAATTTGGTTTTATATCATTGA
GTTTTTTTTGGTAAGTTGATAAACCAGTTTTNNNCCGTCAAACATTTTGT
TTCAAGATTAGCCGTTAGTGCTCGATTTTGAAAATTTAGTCGGTGCTCAT
AT
back to top