CF835406

Overview
NameCF835406
Unique NameCF835406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.630e-25
Identity = 52/87 (59.77%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            T SLAPCI YLR  G   VP  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A GLP  CGV+IPYKIS STDC  V+
Sbjct:   30 TNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          

HSP 2 Score: 30.4166 bits (67), Expect = 7.630e-25
Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = -3
Query:  446 ALKLVSALVLCMLVIGPLSGQAITCGQ 526
            +LKL   +VLCM+V  PL+  A+T GQ
Sbjct:    2 SLKLACVVVLCMVVGAPLAQGAVTSGQ 28          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.931e-25
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = -1
Query:  199 TGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDC 441
            +  LAPCI YL+ GGP+   CC G+++LNAAA TTPDR+TACNCLK AA +I  +N   A GLP  CGV IPY IS ST+C
Sbjct:   34 SSKLAPCIGYLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNC 113          

HSP 2 Score: 30.0314 bits (66), Expect = 9.931e-25
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = -3
Query:  449 AALKLVSALVLCMLVIGPLSGQAITCG 529
            A +KL  A++LC++V  P +   ITCG
Sbjct:    5 AVIKLACAVLLCIVVAAPYAEAGITCG 31          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.943e-24
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            TG L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNC+K AA SI  LN NNA  LP  CGV+IPYKIS ST+C  V+
Sbjct:   32 TGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.253e-24
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = -1
Query:  187 SLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 435
            ++APCI Y+  GG +P  CC GV  LN+ ARTTPDRQ AC CL+ AA ++ PNLN   A G+P+ACGVS+P+ IS +T+C  V+
Sbjct:   35 NVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          

HSP 2 Score: 27.7202 bits (60), Expect = 6.253e-24
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = -3
Query:  449 LKLVSALVLCMLVIGPL-SGQAITCG 523
            +KL   ++ CM+V GP+ + +A+TCG
Sbjct:    5 MKLACLVLACMIVAGPITANRALTCG 30          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.138e-24
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGP-IPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            +G +APCI YL    P +P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P +N   A GLP+ACGV+IPYKIS +T+C  V+
Sbjct:   33 SGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          

HSP 2 Score: 26.1794 bits (56), Expect = 8.138e-24
Identity = 11/26 (42.31%), Postives = 17/26 (65.38%), Query Frame = -3
Query:  449 LKLVSALVLCMLVIGPL-SGQAITCG 523
            +KL   +  CM+V GP+ S  A++CG
Sbjct:    5 MKLACLIFACMIVAGPITSNAALSCG 30          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.138e-24
Identity = 48/84 (57.14%), Postives = 63/84 (75.00%), Query Frame = -1
Query:  187 SLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 435
            +LA CI Y+  GG IP  CC+GV++LN+ A+TTPDRQ ACNC++ AA ++   LN   A G+P+ACGV+IPYKIS ST+C  VR
Sbjct:   35 NLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          

HSP 2 Score: 27.7202 bits (60), Expect = 8.138e-24
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = -3
Query:  449 LKLVSALVLCMLVIGPL-SGQAITCG 523
            +KL   L+ CM+V GP+ S  A++CG
Sbjct:    5 MKLACLLLACMIVAGPITSNAALSCG 30          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.642e-24
Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = -1
Query:  190 TGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKV 441
            TG+LAPC+ YLRS   +PVP  CCN VR LN AARTT D++TAC CLKQ A ++  LN N A GLP  CGV+IPYKIS +TDC +V
Sbjct:   34 TGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.645e-23
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = -1
Query:  187 GSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 438
            GSLAPC  YL  GG +P  CC GV++LN+ A+TTPDRQ AC C++  A SI  LNP+ A GLP  CGVSIPY IS+ST+C  ++
Sbjct:   32 GSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.734e-23
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  190 SLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKV 435
            ++ PC+ Y R G      CC+GVRSL AAA TT DR+TACNCLK AA  I  LN  NA  +P  CGVS+PY IS S DC +V
Sbjct:   34 AVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          

HSP 2 Score: 26.9498 bits (58), Expect = 6.734e-23
Identity = 16/36 (44.44%), Postives = 22/36 (61.11%), Query Frame = -3
Query:  428 MAALKLVS-ALVLCMLVIGPLSGQAITCGQGDWLIG 532
            MA  +LV  ALV  +L+  P +  AITCGQ +  +G
Sbjct:    1 MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVG 36          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.734e-23
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  190 SLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKV 435
            ++ PC+ Y R G      CC+GVRSL AAA TT DR+TACNCLK AA  I  LN  NA  +P  CGVS+PY IS S DC +V
Sbjct:   34 AVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          

HSP 2 Score: 26.9498 bits (58), Expect = 6.734e-23
Identity = 16/36 (44.44%), Postives = 22/36 (61.11%), Query Frame = -3
Query:  428 MAALKLVS-ALVLCMLVIGPLSGQAITCGQGDWLIG 532
            MA  +LV  ALV  +L+  P +  AITCGQ +  +G
Sbjct:    1 MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVG 36          
The following BLAST results are available for this feature:
BLAST of CF835406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP1_GOSHI7.630e-2559.77Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_SPIOL9.931e-2560.49Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP5_LENCU1.943e-2463.95Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTPA_BRAOT6.253e-2454.76Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTPD_BRAOT8.138e-2456.98Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP1_ARATH8.138e-2457.14Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP_DAUCA9.642e-2462.79Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP3_ARATH1.645e-2358.33Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP1_ORYSJ6.734e-2356.10Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI6.734e-2356.10Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01D01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835406 ID=CF835406; Name=CF835406; organism=Citrus sinensis; type=EST; length=561bp
CAAACTGACCATGACATGAAAACCCTAGACAATAAGACACAACATGAAAC
GAGGGCGGGAACGAGACTCGCAGTACAAAGTGTAGAGAGAGACTCCTAAT
TCGGACACAAAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAAC
TTAAATATGAAAATCAACAGCCCAAATTCCTGTTCACCGGACCTTAAAGC
AGTCAGTGGAGATGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCGT
GGAAGACCAACAGCATTATTAGGGTTGAGGTTAGGGATTGATCCGGCGGC
TTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGG
CAGCGTTGAGAGACCTGACGCCGTTGCAGCATGGCACAGGTATAGGGCCG
CCCGATCTCAAGTAAACGATGCATGGTGCCAATGAGCCAGTCACCCTGCC
CACATGTTATGGCCTGACCACTCAGGGGACCAATCACCAACATGCACAGA
ACCAAAGCTGAAACAAGCTTGAGGGCAGCCATTTGAGATTTCCTCCTGAG
ATTTTCTTTTT
back to top