CF835406

Overview
NameCF835406
Unique NameCF835406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3300 contig Csv1_Contig3300:203..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.464e-21
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = -1
Query:  190 TGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKV 441
            + ++ PC+ Y R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AA  I  LN   A  +P  CGVSIPY IS STDC +V
Sbjct:   37 SSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          

HSP 2 Score: 22.7126 bits (47), Expect = 3.464e-21
Identity = 12/41 (29.27%), Postives = 19/41 (46.34%), Query Frame = -3
Query:  428 LRRKSQMAALKLVSALVLCMLVIGPLSGQAITCGQGDWLIG 550
            + R  ++A    V A    +++    S  A+TCGQ    IG
Sbjct:    1 MARSMKLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIG 41          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.479e-21
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = -1
Query:  187 SLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 435
            SL+PC+ YL  GG +P PCC GV+ LN  A+TTPDRQ AC CL+ AA  +   NP+ A GLP  CGVSIPY IS ST+C  ++
Sbjct:   33 SLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGV---NPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.303e-20
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = -1
Query:  190 TGSLAPCIVYLRSGGPIP-VPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKV 441
            + ++A C+ Y R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AA  I  LN  NA  +P  CGVS+PY IS STDC +V
Sbjct:   33 SSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.223e-20
Identity = 49/85 (57.65%), Postives = 57/85 (67.06%), Query Frame = -1
Query:  187 GSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 438
            G+LA CI YL  G P+   CCNGV +L   A TTPDRQ AC CL+ AA ++ P LN   A GLP AC V+IPYKIS ST+C  VR
Sbjct:   34 GNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.792e-20
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  190 LAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKV 432
            +A CI YLR  GP+P  CCNGV++L  +A TT DR+TAC CL  A+ +I  +N   A GLP  CGVSIPYKIS ST+C +V
Sbjct:   10 MASCINYLRGAGPLPAACCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.468e-20
Identity = 46/82 (56.10%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  187 LAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 432
            L  C+ Y R GG IP  CC GVR+LN  A+TTPDRQTACNCLK        LN     G+P  CGV+IPY I + TDC KVR
Sbjct:   32 LTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.447e-20
Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            T  LAPC+ YL   GP+   CC GV+ L  AA+T  DR+TAC CLK AA SI  ++   A GLP  CGV+IPYKIS STDC  V+
Sbjct:   31 TSGLAPCLPYLEGRGPLG-GCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.103e-19
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = -1
Query:  187 LAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 432
            LAPC+ YL+  GP+   CC GV+ L  AA++  DR+TAC CLK AA +I  ++   A GLP ACGV+IPYKIS STDC KV+
Sbjct:   34 LAPCLPYLQGRGPLG-SCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.882e-19
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            T  LAPC+ YL+  GP+   CC GV++L  +A+TT DR+TAC CLK AA +I  ++ N A G+P  C V+IPYKIS STDC  V+
Sbjct:   31 TAGLAPCLPYLQGRGPLG-GCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CF835406 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.458e-19
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = -1
Query:  187 TGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCFKVR 441
            T  LAPC+ YL+  GP+   CC GV+ L  +A+TT DR+TAC CLK AA +I  ++ N A G+P  C V+IPYKIS STDC  V+
Sbjct:   31 TAGLAPCLPYLQGRGPLG-GCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
The following BLAST results are available for this feature:
BLAST of CF835406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP2_SORBI3.464e-2156.47Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP4_ARATH4.479e-2156.63Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_SORBI1.303e-2056.47Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_ARATH2.223e-2057.65Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP3_VITSX3.792e-2056.79Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
SCA_LILLO6.468e-2056.10Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP2_SOLLC8.447e-2055.29Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP2_TOBAC1.103e-1956.10Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_SOLLC1.882e-1952.94Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN2.458e-1952.94Non-specific lipid-transfer protein 1 OS=Solanum p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835406 ID=CF835406; Name=CF835406; organism=Citrus sinensis; type=EST; length=561bp
CAAACTGACCATGACATGAAAACCCTAGACAATAAGACACAACATGAAAC
GAGGGCGGGAACGAGACTCGCAGTACAAAGTGTAGAGAGAGACTCCTAAT
TCGGACACAAAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAAC
TTAAATATGAAAATCAACAGCCCAAATTCCTGTTCACCGGACCTTAAAGC
AGTCAGTGGAGATGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCGT
GGAAGACCAACAGCATTATTAGGGTTGAGGTTAGGGATTGATCCGGCGGC
TTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGG
CAGCGTTGAGAGACCTGACGCCGTTGCAGCATGGCACAGGTATAGGGCCG
CCCGATCTCAAGTAAACGATGCATGGTGCCAATGAGCCAGTCACCCTGCC
CACATGTTATGGCCTGACCACTCAGGGGACCAATCACCAACATGCACAGA
ACCAAAGCTGAAACAAGCTTGAGGGCAGCCATTTGAGATTTCCTCCTGAG
ATTTTCTTTTT
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