CF835434

Overview
NameCF835434
Unique NameCF835434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8915 contig Csv1_Contig8915:96..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 OS=Homo sapiens GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  217 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 510
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  L   +   LSDWE +F  KY  VG+++
Sbjct:   72 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLL 171          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: CB5D2_CAEBR (Cytochrome b5 domain-containing protein 2 homolog OS=Caenorhabditis briggsae GN=tag-131 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  220 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRV 507
            FTP QL  ++G+  SKP Y+AI GRV+DV   K +YGPG +Y  FAG+DA+RA       ++ +  S  GL   E+  + DW   ++ +YP+VG V
Sbjct:  101 FTPEQLHFFDGSRDSKPCYLAILGRVYDVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFTENGLVASTHGLSHDELLSIRDWVSFYDKEYPLVGVV 196          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: CB5D2_CAEEL (Cytochrome b5 domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=tag-131 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  220 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRV 507
            FTP QL  ++GT  SKPIY+AI GRV++V   K +YGPG +Y  FAG+DA+RA       +  +  +  GL   E+  + DW   ++ +YP+VG V
Sbjct:  101 FTPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFQESGLIATTHGLSHDELLSIRDWVSFYDKEYPLVGVV 196          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  217 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 510
            +FTPA+L +Y+G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  L   +   L+DW+ +F  KY  VG+++
Sbjct:   72 DFTPAELRRYDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKLL 171          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  217 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 510
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  L   +   LSDW+ +F  KY  VG+++
Sbjct:   72 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKLL 171          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  217 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 510
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  L   +   LSDW+ +F  KY  VG+++
Sbjct:   71 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKLL 170          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  217 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDD---DVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 510
            +FTPA+L +++G    + I +AI G+VFDVT G+ FYGP G Y +FAG+DASR LA    + +   D    L  L   +   L+DW+ +F  KY  VG+++
Sbjct:   71 DFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKLL 170          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: PGRC2_RAT (Membrane-associated progesterone receptor component 2 OS=Rattus norvegicus GN=Pgrmc2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = -2
Query:  217 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPE---KEMGVLSDWEKKFEAKYPVVGRVV 510
            +F+  QL QY+G    + I +A+ G+VFDVT G  FYGP G Y +FAG+DASR LA    + D +    D L +    +M  + +WE +F+ KY  VGR++
Sbjct:   96 DFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLL 195          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: PGRC2_MOUSE (Membrane-associated progesterone receptor component 2 OS=Mus musculus GN=Pgrmc2 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = -2
Query:  217 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPE---KEMGVLSDWEKKFEAKYPVVGRVV 510
            +F+  QL QY+G    + I +A+ G+VFDVT G  FYGP G Y +FAG+DASR LA    + D +    D L +    +M  + +WE +F+ KY  VGR++
Sbjct:   96 DFSLEQLRQYDGARTPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLL 195          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: PGRC2_HUMAN (Membrane-associated progesterone receptor component 2 OS=Homo sapiens GN=PGRMC2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.041e-14
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  217 EFTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPE---KEMGVLSDWEKKFEAKYPVVGRVV 510
            +F+  QL QY+G+   + I +A+ G+VFDVT G  FYGP G Y +FAG+DASR LA    + D +    D L +    +M  + +WE +F+ KY  VGR++
Sbjct:  102 DFSLEQLRQYDGSRNPR-ILLAVNGKVFDVTKGSKFYGPAGPYGIFAGRDASRGLATFCLDKDALRDEYDDLSDLNAVQMESVREWEMQFKEKYDYVGRLL 201          
The following BLAST results are available for this feature:
BLAST of CF835434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PGRC1_HUMAN9.413e-1643.56Membrane-associated progesterone receptor componen... [more]
CB5D2_CAEBR9.413e-1642.71Cytochrome b5 domain-containing protein 2 homolog ... [more]
CB5D2_CAEEL1.229e-1542.71Cytochrome b5 domain-containing protein 2 homolog ... [more]
PGRC1_RAT1.606e-1542.57Membrane-associated progesterone receptor componen... [more]
PGRC1_MOUSE2.097e-1542.57Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN2.097e-1542.57Membrane-associated progesterone receptor componen... [more]
PGRC1_PIG4.672e-1541.58Membrane-associated progesterone receptor componen... [more]
PGRC2_RAT1.041e-1441.58Membrane-associated progesterone receptor componen... [more]
PGRC2_MOUSE1.041e-1441.58Membrane-associated progesterone receptor componen... [more]
PGRC2_HUMAN1.041e-1441.58Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835434 ID=CF835434; Name=CF835434; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTCACACAACTCGCATTCACTTATTAACCATTTCA
TCTCCCTTACAAACTTTTTAATCATACCCACCTCCTCACTCAATACCCAC
ATAAAGATAAGAGCTTTCAGTAGATCACCTTACAAATAAACACAAAAAAA
TAGACATATAAACGCAAAATGCATAATCATAACAAGTAAATTCATAAAAA
GATAAAAAATTTATTAAACAACACGACCCACAACTGGGTACTTAGCTTCG
AATTTCTTCTCCCAGTCACTAAGAACGCCCATCTCTTTCTCTGGGAGGCC
ATCGAGGGAGGGAGTGACATCGTCATCATTCTTGCTCATCTTAGCCAAAG
CTCTGCTGGCATCTTTGCCTGCGAACATCGCGTACGCGCCACCTGGGCCG
TAAAAGGACTTGCCTGTTGTCACGTCGAACACGCGGCCTTTGATTGCCAC
GTATATTGGTTTTGATGGGTCTGTTCCGTTGTATTGGATCAGCTGAGCCG
GGGTGAATTCCATTGACGAATGAACGAACGATGATCGTCTGGTTTGGTTG
GAAGCG
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