CF835434

Overview
NameCF835434
Unique NameCF835434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: CB5D2_DANRE (Cytochrome b5 domain-containing protein 2 OS=Danio rerio GN=cyb5d2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  217 TPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 504
            T  QL  YNG   SK +Y+AI G+VFDV  G+  YGPGG Y  F GKDASRA       +  ++  +    E ++  L DW   ++  Y  VG+++
Sbjct:   55 TKEQLSLYNGGKNSKGLYLAILGQVFDVEKGRKHYGPGGGYHFFTGKDASRAFITGDFTEAGLSNDVSDFSESQIVALYDWLSFYQRDYTPVGKLI 150          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: CB5D2_RAT (Cytochrome b5 domain-containing protein 2 OS=Rattus norvegicus GN=Cyb5d2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = -2
Query:  217 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 507
            F P +L +Y G      +Y+A+ GRV+DV++G+  Y PG  Y+ FAG+DASRA      ++  +   ++GL   E+  L +W   +E  Y  VGR++
Sbjct:   38 FVPEELARYRGGPGDPGLYLALLGRVYDVSSGRKHYEPGAHYSGFAGRDASRAFVTGDYSEAGLVDDVNGLSSSEILTLHNWLSFYEKNYVFVGRLI 134          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: CB5D2_MOUSE (Cytochrome b5 domain-containing protein 2 OS=Mus musculus GN=Cyb5d2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = -2
Query:  217 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRVV 507
            F P +L +Y G      +Y+A+ GRV+DV++G+  Y PG  Y+ FAG+DASRA      ++  +   ++GL   E+  L +W   +E  Y  VGR+V
Sbjct:   38 FLPEELARYRGGPGDPGLYLALLGRVYDVSSGRRHYEPGAHYSGFAGRDASRAFVTGDYSEAGLVDDINGLSSSEILTLHNWLSFYEKNYVFVGRLV 134          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: PGRC1_CHICK (Membrane-associated progesterone receptor component 1 OS=Gallus gallus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.711e-13
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = -2
Query:  217 EFTPAQLIQYNGT-DPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPE---KEMGVLSDWEKKFEAKYPVVGRVV 510
            +FT  QL  Y+G  DP   I +A+ G+VFDVT    FYGP G Y +FAG+DASR LA    + + +    D L +    +   L DWE +F  KY  VG+++
Sbjct:   70 DFTLEQLRPYDGVRDPR--ILMAVNGKVFDVTRASKFYGPDGPYGIFAGRDASRGLATFCLDKEALRDDYDDLSDLNATQQETLRDWESQFTFKYHHVGKLL 169          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: CB5D2_HUMAN (Cytochrome b5 domain-containing protein 2 OS=Homo sapiens GN=CYB5D2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.835e-12
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  220 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRV 507
            F P +L +Y G      +Y+A+ GRV+DV++G+  Y PG  Y+ FAG+DASRA      ++  +   +  L   EM  L +W   +E  Y  VGRV
Sbjct:   38 FIPEELSRYRGGPGDPGLYLALLGRVYDVSSGRRHYEPGSHYSGFAGRDASRAFVTGDCSEAGLVDDVSDLSAAEMLTLHNWLSFYEKNYVCVGRV 133          
BLAST of CF835434 vs. ExPASy Swiss-Prot
Match: CB5D2_XENTR (Cytochrome b5 domain-containing protein 2 OS=Xenopus tropicalis GN=cyb5d2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = -2
Query:  220 QLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLPEKEMGVLSDWEKKFEAKYPVVGRV 495
            +L  Y+G   S  IY+AI G+VFDV  G   YGPGG+Y+ FAGKDASRA       +  +   +  L   +M  L +W   ++  Y  +G++
Sbjct:   51 ELSVYDGGPGSSGIYLAILGQVFDVHKGSKHYGPGGSYSFFAGKDASRAYMTGDFTEKGLVDDVTELSPLQMLHLHNWLSFYQQNYITIGKL 142          
The following BLAST results are available for this feature:
BLAST of CF835434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CB5D2_DANRE1.503e-1339.58Cytochrome b5 domain-containing protein 2 OS=Danio... [more]
CB5D2_RAT3.348e-1336.08Cytochrome b5 domain-containing protein 2 OS=Rattu... [more]
CB5D2_MOUSE3.348e-1337.11Cytochrome b5 domain-containing protein 2 OS=Mus m... [more]
PGRC1_CHICK5.711e-1341.18Membrane-associated progesterone receptor componen... [more]
CB5D2_HUMAN4.835e-1237.50Cytochrome b5 domain-containing protein 2 OS=Homo ... [more]
CB5D2_XENTR5.345e-1138.04Cytochrome b5 domain-containing protein 2 OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835434 ID=CF835434; Name=CF835434; organism=Citrus sinensis; type=EST; length=556bp
TTTTTTTTTTTTTTTTTCACACAACTCGCATTCACTTATTAACCATTTCA
TCTCCCTTACAAACTTTTTAATCATACCCACCTCCTCACTCAATACCCAC
ATAAAGATAAGAGCTTTCAGTAGATCACCTTACAAATAAACACAAAAAAA
TAGACATATAAACGCAAAATGCATAATCATAACAAGTAAATTCATAAAAA
GATAAAAAATTTATTAAACAACACGACCCACAACTGGGTACTTAGCTTCG
AATTTCTTCTCCCAGTCACTAAGAACGCCCATCTCTTTCTCTGGGAGGCC
ATCGAGGGAGGGAGTGACATCGTCATCATTCTTGCTCATCTTAGCCAAAG
CTCTGCTGGCATCTTTGCCTGCGAACATCGCGTACGCGCCACCTGGGCCG
TAAAAGGACTTGCCTGTTGTCACGTCGAACACGCGGCCTTTGATTGCCAC
GTATATTGGTTTTGATGGGTCTGTTCCGTTGTATTGGATCAGCTGAGCCG
GGGTGAATTCCATTGACGAATGAACGAACGATGATCGTCTGGTTTGGTTG
GAAGCG
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