CF835435

Overview
NameCF835435
Unique NameCF835435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8915 contig Csv1_Contig8915:95..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: CB5D2_DANRE (Cytochrome b5 domain-containing protein 2 OS=Danio rerio GN=cyb5d2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 3
Query:   54 TPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 341
            T  QL  YNG   SK +Y+AI G+VFDV  G+  YGPGG Y  F GKDASRA       +  ++  +   +E ++  L DW   ++  Y  VG+++
Sbjct:   55 TKEQLSLYNGGKNSKGLYLAILGQVFDVEKGRKHYGPGGGYHFFTGKDASRAFITGDFTEAGLSNDVSDFSESQIVALYDWLSFYQRDYTPVGKLI 150          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: CB5D2_RAT (Cytochrome b5 domain-containing protein 2 OS=Rattus norvegicus GN=Cyb5d2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   51 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 341
            F P +L +Y G      +Y+A+ GRV+DV++G+  Y PG  Y+ FAG+DASRA      ++  +   ++GL+  E+  L +W   +E  Y  VGR++
Sbjct:   38 FVPEELARYRGGPGDPGLYLALLGRVYDVSSGRKHYEPGAHYSGFAGRDASRAFVTGDYSEAGLVDDVNGLSSSEILTLHNWLSFYEKNYVFVGRLI 134          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: CB5D2_MOUSE (Cytochrome b5 domain-containing protein 2 OS=Mus musculus GN=Cyb5d2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.910e-13
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   51 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRVV 341
            F P +L +Y G      +Y+A+ GRV+DV++G+  Y PG  Y+ FAG+DASRA      ++  +   ++GL+  E+  L +W   +E  Y  VGR+V
Sbjct:   38 FLPEELARYRGGPGDPGLYLALLGRVYDVSSGRRHYEPGAHYSGFAGRDASRAFVTGDYSEAGLVDDINGLSSSEILTLHNWLSFYEKNYVFVGRLV 134          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: PGRC1_CHICK (Membrane-associated progesterone receptor component 1 OS=Gallus gallus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   48 EFTPAQLIQYNGT-DPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTE---KEMGVLSDWEKKFEAKYPVVGRVV 341
            +FT  QL  Y+G  DP   I +A+ G+VFDVT    FYGP G Y +FAG+DASR LA    + + +    D L++    +   L DWE +F  KY  VG+++
Sbjct:   70 DFTLEQLRPYDGVRDPR--ILMAVNGKVFDVTRASKFYGPDGPYGIFAGRDASRGLATFCLDKEALRDDYDDLSDLNATQQETLRDWESQFTFKYHHVGKLL 169          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: CB5D2_HUMAN (Cytochrome b5 domain-containing protein 2 OS=Homo sapiens GN=CYB5D2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 3
Query:   51 FTPAQLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRV 338
            F P +L +Y G      +Y+A+ GRV+DV++G+  Y PG  Y+ FAG+DASRA      ++  +   +  L+  EM  L +W   +E  Y  VGRV
Sbjct:   38 FIPEELSRYRGGPGDPGLYLALLGRVYDVSSGRRHYEPGSHYSGFAGRDASRAFVTGDCSEAGLVDDVSDLSAAEMLTLHNWLSFYEKNYVCVGRV 133          
BLAST of CF835435 vs. ExPASy Swiss-Prot
Match: CB5D2_XENTR (Cytochrome b5 domain-containing protein 2 OS=Xenopus tropicalis GN=cyb5d2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.050e-11
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 3
Query:   63 QLIQYNGTDPSKPIYVAIKGRVFDVTTGKSFYGPGGAYAMFAGKDASRALAKMSKNDDDVTPSLDGLTEKEMGVLSDWEKKFEAKYPVVGRV 338
            +L  Y+G   S  IY+AI G+VFDV  G   YGPGG+Y+ FAGKDASRA       +  +   +  L+  +M  L +W   ++  Y  +G++
Sbjct:   51 ELSVYDGGPGSSGIYLAILGQVFDVHKGSKHYGPGGSYSFFAGKDASRAYMTGDFTEKGLVDDVTELSPLQMLHLHNWLSFYQQNYITIGKL 142          
The following BLAST results are available for this feature:
BLAST of CF835435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CB5D2_DANRE8.576e-1439.58Cytochrome b5 domain-containing protein 2 OS=Danio... [more]
CB5D2_RAT1.910e-1336.08Cytochrome b5 domain-containing protein 2 OS=Rattu... [more]
CB5D2_MOUSE1.910e-1337.11Cytochrome b5 domain-containing protein 2 OS=Mus m... [more]
PGRC1_CHICK3.259e-1341.18Membrane-associated progesterone receptor componen... [more]
CB5D2_HUMAN2.759e-1237.50Cytochrome b5 domain-containing protein 2 OS=Homo ... [more]
CB5D2_XENTR3.050e-1138.04Cytochrome b5 domain-containing protein 2 OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835435 ID=CF835435; Name=CF835435; organism=Citrus sinensis; type=EST; length=552bp
CCGCTACCAACCACATCAGACGATCATCGTTCGTTCATTCGTCAATGGAA
TTCACACCGGCTCAGCTGATCCAATACAACGGAACAGACCCATCAAAACC
AATATACGTGGCAATCAAAGGCCGCGTGTTCGACGTGACAACAGGCAAGT
CCTTTTACGGCCCAGGTGGCGCGTACGCGATGTTCGCAGGCAAAGATGCC
AGCAGAGCTTTGGCTAAGATGAGCAAGAATGATGACGATGTCACTCCCTC
CCTCGATGGCCTCACAGAGAAAGAGATGGGCGTTCTTAGTGACTGGGAGA
AGAAATTCGAAGCTAAGTACCCAGTTGTGGGTCGTGTTGTTTAATAAATT
TTTTATCTTTTTATGAATTTACTTGTTATGATTATGCATTTTGCGTTTAT
ATGTCTATTTTTTTGTGTTTATTTGTAAGGTGATCTACTGAAAGCTCTTA
TCTTTATGTGGGTATTGAGTGAGGAGTGTGTATGATTAAAAGTTTGTAAG
GGAATGAATGGTTAATAAATGAATGCGAGTTGTGTGAAAAAAAAAAAAAA
AA
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