CF835438

Overview
NameCF835438
Unique NameCF835438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835438 vs. ExPASy Swiss-Prot
Match: PSAD_PORPU (Photosystem I reaction center subunit II OS=Porphyra purpurea GN=psaD PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.842e-47
Identity = 93/140 (66.43%), Postives = 104/140 (74.29%), Query Frame = 3
Query:  252 PPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 668
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR G NLL LA+KEQCLALGT+L+ K+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  +     SIGKNV+PI VKFT K  YD
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLYLAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDHSIGKNVNPINVKFTNKATYD 141          
BLAST of CF835438 vs. ExPASy Swiss-Prot
Match: PSAD_PORYE (Photosystem I reaction center subunit II OS=Porphyra yezoensis GN=psaD PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.460e-46
Identity = 91/140 (65.00%), Postives = 105/140 (75.00%), Query Frame = 3
Query:  252 PPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 668
            P  ++ N PSP FGGSTGG LR A+VEE Y ITW    E  FEMPTGG A MR G NLL LA+KEQCLALGT+L+SK+KI  Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR  V     SIG+N++P++VKF  K  YD
Sbjct:    2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRNGENLLYLAKKEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGRASVNSVDHSIGQNINPVDVKFMNKATYD 141          
BLAST of CF835438 vs. ExPASy Swiss-Prot
Match: PSAD_ODOSI (Photosystem I reaction center subunit II OS=Odontella sinensis GN=psaD PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.252e-46
Identity = 92/136 (67.65%), Postives = 104/136 (76.47%), Query Frame = 3
Query:  261 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 668
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NLL LARKEQCLALGT+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR  V     SIGKN +P  +KF+G   Y+
Sbjct:    3 LNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138          
BLAST of CF835438 vs. ExPASy Swiss-Prot
Match: PSAD_MASLA (Photosystem I reaction center subunit II OS=Mastigocladus laminosus GN=psaD PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.547e-46
Identity = 87/130 (66.92%), Postives = 103/130 (79.23%), Query Frame = 3
Query:  279 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 668
            +PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMPTGGAA MRQG NLL LARKEQC+ALG++LR      Y+ YR++PNGE  Y+HP DGV+PEKVNPGRQ V  N R IG+N  P ++KF+G   YD
Sbjct:    9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIALGSQLRRLKITDYKIYRIYPNGETAYIHPADGVFPEKVNPGRQKVRYNDRRIGQNPDPAKLKFSGVATYD 138          
BLAST of CF835438 vs. ExPASy Swiss-Prot
Match: PSAD_SKECO (Photosystem I reaction center subunit II OS=Skeletonema costatum GN=psaD PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.596e-45
Identity = 90/136 (66.18%), Postives = 103/136 (75.74%), Query Frame = 3
Query:  261 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 668
            L+  TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGG+AIMR G NLL LARKEQCLAL T+LR+     Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR  V     SIGKN +P  +KF+G   Y+
Sbjct:    3 LNLKTPFPTFGGSTGGWLRAAEVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLARKEQCLALSTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138          
BLAST of CF835438 vs. ExPASy Swiss-Prot
Match: PSAD_SYNY3 (Photosystem I reaction center subunit II OS=Synechocystis sp. (strain PCC 6803) GN=psaD PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.784e-44
Identity = 87/133 (65.41%), Postives = 103/133 (77.44%), Query Frame = 3
Query:  282 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYDL 671
            P FGGSTGGLL KA  EE Y ITW S  EQ+FEMPTGGAAIM +G NLL LARKEQCLALGT+LR+K+K K   Y+ YRV+P+GEVQYLHP DGV+PEKVN GR+  G   R IG+N  P+ +KF+GK  Y++
Sbjct:    9 PKFGGSTGGLLSKANREEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLALGTQLRTKFKPKIQDYKIYRVYPSGEVQYLHPADGVFPEKVNEGREAQGTKTRRIGQNPEPVTIKFSGKAPYEV 141          
BLAST of CF835438 vs. ExPASy Swiss-Prot
Match: PSAD_SYNP6 (Photosystem I reaction center subunit II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.721e-42
Identity = 83/132 (62.88%), Postives = 100/132 (75.76%), Query Frame = 3
Query:  279 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVY 665
            +P+FGGSTGGLL+ A+ EE Y ITW S KEQ+FE+PTGGAA+M +G NLL  ARKEQ LALGT+LR+K+K K   Y+ YR FP  +V YLHPKDGV+PEKVN GR   G   R IG+N +P  +KFTGKQ Y
Sbjct:    9 TPVFGGSTGGLLKSAETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALALGTQLRTKFKPKIESYKIYRFFPGADVGYLHPKDGVFPEKVNEGRSFAGKVDRRIGQNPNPATIKFTGKQPY 140          
BLAST of CF835438 vs. ExPASy Swiss-Prot
Match: PSAD_CYACA (Photosystem I reaction center subunit II OS=Cyanidium caldarium GN=psaD PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.165e-41
Identity = 80/136 (58.82%), Postives = 102/136 (75.00%), Query Frame = 3
Query:  261 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVY 665
            L+   PSP F G+TGG LR + +EE Y ITW S  E IFE+PTGG A M+ G NLL LA+KEQCLALG +L+ K+KI  ++ YR+FPNGE Q+LHPKDGV+PEKVN GR+ +G    +IGKN++P EVKFT K ++
Sbjct:    5 LNLKMPSPEFYGNTGGWLRSSDIEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAKKEQCLALGNQLKIKFKILNFKIYRIFPNGEAQFLHPKDGVFPEKVNEGRKPIGKIDHNIGKNLNPAEVKFTHKTIF 140          
BLAST of CF835438 vs. ExPASy Swiss-Prot
Match: PSAD_NOSS8 (Photosystem I reaction center subunit II OS=Nostoc sp. (strain PCC 8009) GN=psaD PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.563e-40
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = 3
Query:  279 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 668
            +P+F GSTGGLL KA VEE Y ITW SPK Q+FE+PTGGAA M QG NLL LARKEQ +ALG +LR K+KI  Y+ YR+FPNGE  ++HP DGV+PEKVN GR+ V    R IG+N SP ++KF+GK  YD
Sbjct:    8 TPLFAGSTGGLLTKANVEEKYAITWTSPKAQVFELPTGGAATMNQGENLLYLARKEQGIALGGQLR-KFKITDYKIYRIFPNGETTFIHPADGVFPEKVNEGREKVRFVPRRIGQNPSPAQLKFSGKYTYD 137          
BLAST of CF835438 vs. ExPASy Swiss-Prot
Match: PSAD_THEVL (Photosystem I reaction center subunit II OS=Thermosynechococcus vulcanus GN=psaD PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.548e-40
Identity = 79/130 (60.77%), Postives = 98/130 (75.38%), Query Frame = 3
Query:  282 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEVKFTGKQVYD 668
            P++GGSTGGLL  A  EE Y ITW SPKEQ+FEMPT GAA+MR+G NL+  ARKEQCLAL   +LR +    Y+ YR+FP+GE   +HPKDGV+PEKVN GR+ V    RSIG+N +P ++KFTGK+ YD
Sbjct:    9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 138          
The following BLAST results are available for this feature:
BLAST of CF835438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_PORPU3.842e-4766.43Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_PORYE1.460e-4665.00Photosystem I reaction center subunit II OS=Porphy... [more]
PSAD_ODOSI3.252e-4667.65Photosystem I reaction center subunit II OS=Odonte... [more]
PSAD_MASLA5.547e-4666.92Photosystem I reaction center subunit II OS=Mastig... [more]
PSAD_SKECO3.596e-4566.18Photosystem I reaction center subunit II OS=Skelet... [more]
PSAD_SYNY31.784e-4465.41Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_SYNP63.721e-4262.88Photosystem I reaction center subunit II OS=Synech... [more]
PSAD_CYACA9.165e-4158.82Photosystem I reaction center subunit II OS=Cyanid... [more]
PSAD_NOSS81.563e-4063.36Photosystem I reaction center subunit II OS=Nostoc... [more]
PSAD_THEVL4.548e-4060.77Photosystem I reaction center subunit II OS=Thermo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835438 ID=CF835438; Name=CF835438; organism=Citrus sinensis; type=EST; length=768bp
CAAGAACACATCTCTTTCTGCTAACTCGAAAATCTACAATTTCCATGGCA
ACCCAAGCAGGCCTCTTTACCCCAAGTATTATCACCACCAAAACAAGCAA
GCTTCTTTTGAACCCATGGAAGCCAACCTCATCCTTTTCATTCACCAGTC
CCAAACCCCTCACCTTCTCCATGGCTCAAAGAACCGTCAGAGCCGCAGCC
GCCGAAGAAAAAACCGAAGCACCCACGAAGGAGGCTCCAGTAGGCTTCAC
CCCACCGCAGCTAGACCCAAACACCCCATCCCCAATCTTTGGAGGAAGCA
CTGGGGGATTGTTGAGAAAGGCCCAAGTTGAAGAATTCTATGTCATCACA
TGGGAGTCGCCAAAGGAACAAATCTTTGAGATGCCGACTGGTGGAGCTGC
CATTATGAGGCAAGGTCCTAACTTGCTTAAGTTGGCTAGGAAAGAACAGT
GCTTGGCTCTTGGTACTAGATTGAGATCAAAGTACAAGATCAAGTACCAG
TTTTACAGGGTCTTTCCTAATGGTGAGGTTCAATATCTTCACCCCAAGGA
TGGAGTTTATCCTGAAAAAGTGAACCCTGGTCGCCAGGGAGTGGGAGTGA
ATTACAGATCAATTGGGAAGAATGTCAGTCCCATCGAGGTTAAGTTCACT
GGGAAGCAAGTCTATGACTTGTGAGATGCAGATGATTGTTTAATCTCTTG
TTTTGTGTGATTGTAGATTCTACTGTTCTTTACTTTTCTTTTTTAAATGT
ATCTTTTAAAAATATTTT
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