CF835440

Overview
NameCF835440
Unique NameCF835440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.698e-33
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427
            PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  287 PGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.698e-33
Identity = 69/141 (48.94%), Postives = 93/141 (65.96%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 424
            PGDNVGFNV+ +A  D++RG V   ++  P   A  FT+QV+++ HP  I  GY PV  CHT+  A  F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+  +++ K
Sbjct:  283 PGDNVGFNVRGIAKGDIRRGDVCGPAEQPPT-VADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGMCIAIQPK 422          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.524e-33
Identity = 69/141 (48.94%), Postives = 92/141 (65.25%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 424
            PGDNVGFNV+ +   D++RG V   S D P   A  F +QV++++HP  +  GY PV  CHT+ IA  F EL+ K+D R+G+  E+ P FLK GDA +VK+ PT+PMV+E   + P LGRFAVRDM  T+A GV   +  K
Sbjct:  283 PGDNVGFNVRGIGKGDIRRGDVCGPS-DVPPTVAEEFIAQVVVLHHPSALTVGYTPVFHCHTAQIACSFVELMKKLDPRTGQVKEENPTFLKTGDAAIVKIRPTQPMVIEKVKEIPQLGRFAVRDMGSTIAAGVCMDITPK 422          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.603e-33
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427
            PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  287 PGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.603e-33
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427
            PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  287 PGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.603e-33
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427
            PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  287 PGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.011e-33
Identity = 65/142 (45.77%), Postives = 97/142 (68.31%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 427
            PGDN+GFNVK V    L+RG VA ++ + P   A  FT ++ ++ HP  I  GY PVL  HT+ + V F EL+ K+D R+G   E++P+++K GD+ +V+  P KP+VVE +S++PPLGRFA+RD  +T+A GV+  V+K +
Sbjct:  291 PGDNIGFNVKGVEKSQLRRGDVAGHTTNPPT-VAEEFTGRIFVLYHPTAIAAGYTPVLHIHTATVPVTFEELLQKLDPRTGSVAEEKPQYIKQGDSAIVRFKPRKPVVVEKYSEFPPLGRFAIRDSGRTIAAGVVIDVKKAE 431          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.011e-33
Identity = 68/141 (48.23%), Postives = 95/141 (67.38%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 424
            PGDNVGFNV+ V   D++RG V   + D P   A  FT+Q++++ HP  I  GY PV  CHT+ IA  F EL  K+D RSG+  E+ P FLK+GDA +V++ P++PMV+E+  + P LGRFA+RDM  T+A G+  +V+ K
Sbjct:  283 PGDNVGFNVRGVGKNDIRRGDVCGPA-DIPPTVADEFTAQIVVLQHPSAITVGYTPVFHCHTAQIACTFVELRKKLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGMCIAVQPK 422          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.011e-33
Identity = 66/124 (53.23%), Postives = 88/124 (70.97%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 373
            PGDNVGFNV+ +AVKDLK+G+V  +  +DP     +FT+QVI+MNHP +I  GY PV+DCHT+HIA +F   + K+D+R+ K   + P     GD  +VKM+P KP+  ETF+DY PLG FAVR
Sbjct:  273 PGDNVGFNVRGLAVKDLKKGYVVGDVTNDPPVGCKSFTAQVIVMNHPKKIQPGYTPVIDCHTAHIACQFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCETFNDYAPLGPFAVR 396          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.851e-33
Identity = 64/142 (45.07%), Postives = 98/142 (69.01%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 421
            PGDN+GFNV+ V+  D+KRG VA ++   P   R    F +Q+I++NHP  I  GY+PVL  HT+ I V+F +++ K+D R+G  +E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S++K
Sbjct:  285 PGDNIGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK 426          
The following BLAST results are available for this feature:
BLAST of CF835440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_METM72.698e-3347.89Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METB62.698e-3348.94Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_METMJ3.524e-3348.94Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_METMP4.603e-3347.89Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM64.603e-3347.89Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM54.603e-3347.89Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_THEPD6.011e-3345.77Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_METPE6.011e-3348.23Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_GIALA6.011e-3353.23Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_PYRHO7.851e-3345.07Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01D19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835440 ID=CF835440; Name=CF835440; organism=Citrus sinensis; type=EST; length=702bp
TCCGGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATC
TCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAA
GCTGCCAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGAT
TGGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCTG
TCAAGTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCTGGCAAGGAG
CTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAA
GATGATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGACTACCCAC
CCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTAGCTGTTGGT
GTGATCAAGAGTGTTGAAAAGAAGGATCCATCGGGTGCCAAGGTCACCAA
GTCTGCTGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAG
TTAGCTTTTATTTTCTCTGTTTATGCTATTTTTGTCATGTTTTAGTTTGT
TTTACGGTAGACTTCATTTTAATTCTCTGAATTTGGTTTTATATCATTGA
GTTTTTTTTGGTAAGTTGATAAACCAGTTTTTGGATGTCAAACATTTTGT
TTCAAGATTAGCCGTTAGTGCTCGATTTTGAAAATTTAGTCGGTGCTCAT
AT
back to top