CF835440

Overview
NameCF835440
Unique NameCF835440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 43/143 (30.07%), Postives = 82/143 (57.34%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVEKKD 427
            PG+N+   +K +  +++  GF+  +  ++       F +Q++I+ H   I  GY  VL  HT    V+ + L+  +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  358 PGENLKIRLKGIEEEEILPGFILCDP-NNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 499          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 43/143 (30.07%), Postives = 82/143 (57.34%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVEKKD 427
            PG+N+   +K +  +++  GF+  +  ++       F +Q++I+ H   I  GY  VL  HT    V+ + L+  +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  358 PGENLKIRLKGIEEEEILPGFILCDL-NNLCHSGRTFDAQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 499          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 43/143 (30.07%), Postives = 81/143 (56.64%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVEKKD 427
            PG+N+   +K +  +++  GF+  +  +        F  Q++I+ H   I  GY  VL  HT    V+ + L++ +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  487 PGENLKIRLKGIEEEEILPGFILCDPSN-LCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 628          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 43/143 (30.07%), Postives = 81/143 (56.64%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVEKKD 427
            PG+N+   +K +  +++  GF+  +  +        F  Q++I+ H   I  GY  VL  HT    V+ + L++ +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  487 PGENLKIRLKGIEEEEILPGFILCDPSN-LCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 628          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 43/143 (30.07%), Postives = 80/143 (55.94%), Query Frame = 2
Query:    2 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG-VIKSVEKKD 427
            PG+N+   +K +  +++  GF+     +        F  Q++I+ H   I  GY  VL  HT    V+ + L++ +D++SG++ +  P+F+K     + ++     + +ETF D+P +GRF +RD  +T+A+G V+K V +KD
Sbjct:  491 PGENLKIRLKGIEEEEILPGFILCEPSN-LCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD 632          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 2
Query:    5 GDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 415
            G+ V   +K V  +D+  GFV ++ K+ P +    F +Q+ I+     I  G++ V+  HT+   V   +L+ K+++ + ++ +K P F K G   +  +    P+ VET+ DYP LGRF +RD   T+A+G I  +
Sbjct:  548 GEQVKLRIKGVEEEDISPGFVLTSPKN-PIKSVTKFVAQIAIVELKSIIAAGFSCVMHVHTAIEEVHIVKLLHKLEKGTNRKSKKPPAFAKKGMKVIAVLETEAPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKI 683          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: ERF3_KLULA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis GN=SUP35 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 42/137 (30.66%), Postives = 76/137 (55.47%), Query Frame = 2
Query:    5 GDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 415
            G+ V   +K V  +++  GFV ++ K+ P +    F +Q+ I+     +  G++ V+  HT+   V  + L+ K+++ S ++ +K P F K G   +  +   +P+ VET+ DYP LGRF +RD   T+A+G I  +
Sbjct:  562 GEQVRLRIKGVEEEEISAGFVLTSPKN-PVKNVTRFVAQIAIVELKSIMSAGFSCVMHIHTAIEEVTVTRLLHKLEKGSNRKSKKPPAFAKKGMKIIAVIETNEPVCVETYDDYPQLGRFTLRDQGTTIAIGKIVKI 697          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: ERF3_CANAL (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 43/134 (32.09%), Postives = 76/134 (56.72%), Query Frame = 2
Query:    5 GDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 406
            G+ V   +K +  +DL+ G+V ++ K+ P +    F +Q+ I+     + NG++ V+  HT+   VKF EL  K+++ + ++ +K P F K G   +  +   + +  ET+ DYP LGRF +RD   T+A+G I
Sbjct:  579 GEQVRLKIKGIEEEDLQPGYVLTSPKN-PVKTVTRFEAQIAIVELKSILSNGFSCVMHLHTAIEEVKFIELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVGELVCAETYKDYPQLGRFTLRDQGTTIAIGKI 711          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.943e-15
Identity = 40/134 (29.85%), Postives = 75/134 (55.97%), Query Frame = 2
Query:    5 GDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 406
            G+ V   ++ +  +DL  G+V S S + P +    F +Q+ I+     +  G++ V+  HT+   V F++L+  + + + +  +K P F K G   +  +  T+P+ +E++ DYP LGRF +RD  QT+A+G +
Sbjct:  605 GEQVRLRLRGIEEEDLSAGYVLS-SINHPVKTVTRFEAQIAIVELKSILSTGFSCVMHVHTAIEEVTFTQLLHNLQKGTNRRSKKAPAFAKQGMKIIAVLETTEPVCIESYDDYPQLGRFTLRDQGQTIAIGKV 737          
BLAST of CF835440 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 2
Query:    5 GDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 415
            G+ V   +K V  +DL  G+V + S   P +    F +Q+ I+     + NG++ V+  HT+   V F EL  K+++ + ++ +K P F K G   +  +   + +  ET++DYP LGRF +RD   T+A+G I  V
Sbjct:  565 GEQVRLKIKGVEEEDLAPGYVLT-SPLKPIKTITRFEAQIAIVELKSILSNGFSCVMHLHTAIEEVTFIELKHKLEKGTNRKSKKPPAFAKKGMKVIAILETNESVCAETYADYPQLGRFTLRDQGTTIAIGKITKV 700          
The following BLAST results are available for this feature:
BLAST of CF835440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
ERF3A_HUMAN1.757e-1630.07Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE2.295e-1630.07Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB2.997e-1630.07Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN2.997e-1630.07Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_MOUSE3.914e-1630.07Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_YEAST1.487e-1531.39Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_KLULA1.487e-1530.66Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANAL1.487e-1532.09Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_PICPI1.943e-1529.85Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DEBHA9.642e-1532.12Eukaryotic peptide chain release factor GTP-bindin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01D19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835440 ID=CF835440; Name=CF835440; organism=Citrus sinensis; type=EST; length=702bp
TCCGGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATC
TCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAA
GCTGCCAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGAT
TGGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCTG
TCAAGTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCTGGCAAGGAG
CTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAA
GATGATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGACTACCCAC
CCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTAGCTGTTGGT
GTGATCAAGAGTGTTGAAAAGAAGGATCCATCGGGTGCCAAGGTCACCAA
GTCTGCTGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAG
TTAGCTTTTATTTTCTCTGTTTATGCTATTTTTGTCATGTTTTAGTTTGT
TTTACGGTAGACTTCATTTTAATTCTCTGAATTTGGTTTTATATCATTGA
GTTTTTTTTGGTAAGTTGATAAACCAGTTTTTGGATGTCAAACATTTTGT
TTCAAGATTAGCCGTTAGTGCTCGATTTTGAAAATTTAGTCGGTGCTCAT
AT
back to top