CF835444

Overview
NameCF835444
Unique NameCF835444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3712 contig Csv1_Contig3712:7..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LEC_ERYCG (Lectin OS=Erythrina crista-galli PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.854e-13
Identity = 57/192 (29.69%), Postives = 84/192 (43.75%), Query Frame = 3
Query:  234 GRVLYSQPVTAWPAMIST--TFTIRIS-----PYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX----AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGP--DFSESHQVLDWTF 770
            GR LY++PV  W +   T  +F  R S     PY      ADG+ F      S P +                    AVE DT+ N  W  P   H+GID+     N  +S+ +    L +G+   V I YD  +KIL+V + Y  +     I   + + + +P  V VG + +TG   D +E+H V  W+F
Sbjct:   49 GRTLYTKPVHMWDSTTGTVASFETRFSFSIEQPYTRPLP-ADGLVFFMGPTKSKPAQGYGYLGVFNNSKQDNSYQTLAVEFDTFSNP-WDPPQVPHIGIDV-----NSIRSIKTQPFQLDNGQVANVVIKYDAPSKILHVVLVYPSSGAIYTIAEIVDVKQVLPDWVDVGLSGATGAQRDAAETHDVYSWSF 233          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LEC_BOWMI (Lectin OS=Bowringia mildbraedii PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.339e-13
Identity = 60/192 (31.25%), Postives = 91/192 (47.40%), Query Frame = 3
Query:  231 VGRVLYSQPVTAWP-----AMISTTFTIRISPYPNTTDSADGMTFVFAT-DTSPPTEXXXXXXXXXXXXXXXX------AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDFSESHQVLDWTF 770
            VGR LY+ P+  W      A   TTFT  IS   +T  +A  +TF  A+ DT  P+                       AVE DTY N    DP+  H+GID+     N  +S  +S  D ++G+    HI Y+  +K L V  +Y  N    ++   + L+   P  V VGF+A+TG  +++++ +L W+F
Sbjct:   48 VGRALYTAPIRLWQSSSLVASFETTFTFSISQGSSTPAAA--LTFFIASPDTKIPSGSGGRLLGLFGSSNNAGSDNGVVAVEFDTYPNTDIGDPNYRHIGIDV-----NSIRSKAASKWDWQNGKTATAHISYNSASKRLSVVSSYP-NSSPVVVSFDVELNNVGPPDVRVGFSATTG-QYTQTNNILAWSF 230          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LECR_CLALU (Lectin-related protein (Fragment) OS=Cladrastis lutea PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.339e-13
Identity = 69/232 (29.74%), Postives = 100/232 (43.10%), Query Frame = 3
Query:  126 DGSLICMGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX-------AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSESHQVLDWTFTT 776
            D  L+   A+  S G L LT     E+   +P   VGR LYS PV  W       A   T+FT  +   PN   +ADG+ F  A    P T+                       AVE DT+ N +  DP A H+GID+     N  +S  ++    ++G    V I Y    + L   + Y  +    ++   + L   +P  V VGF+A+TG    + E+H VL W+FT+
Sbjct:   52 DELLLQGDALVSSKGELQLTR---VENGQPIP-HSVGRALYSDPVHIWDSSTGSVASFVTSFTFVVEA-PNENKTADGIAFFLAP---PDTQVQSLGGFLGLFNSSVYNSSNQILAVEFDTFSNSW--DPTARHIGIDV-----NSIESTRTATWGWRNGEVAIVLITYVAPAETLIASLTYPSSQTSYILSAAVDLKSILPEWVRVGFSAATGRSAGYVETHDVLSWSFTS 268          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LEC_LENCU (Lectin OS=Lens culinaris PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12
Identity = 61/197 (30.96%), Postives = 91/197 (46.19%), Query Frame = 3
Query:  231 VGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFA-TDTSPPTEXXXXXXXXXXXXXXXX---AVELDTYKNDYWSDPD--ANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAG-----NPLQKLIERPILLSETIPSSVYVGFTASTGPDFSESHQVLDWTF 770
            VGR LYS P+  W       A   T+FT  I   P++ + AD  TF  A  DT P T                    AVE DT+ N  W DP     H+GID+     N  KS+++   +L++G    V I ++  T +L V + Y       N     +   + L + +P  V +GF+A+TG +F+ +H+V  W+F
Sbjct:   71 VGRALYSTPIHIWDRDTGNVANFVTSFTFVIDA-PSSYNVADEFTFFIAPVDTKPQTGGGYLGVFNSKEYDKTSQTVAVEFDTFYNAAW-DPSNKERHIGIDV-----NSIKSVNTKSWNLQNGERANVVIAFNAATNVLTVTLTYPNSLEEENVTSYTLNEVVPLKDVVPEWVRIGFSATTGAEFA-AHEVHSWSF 259          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LEC_ERYCO (Lectin OS=Erythrina corallodendron PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.109e-12
Identity = 53/191 (27.75%), Postives = 79/191 (41.36%), Query Frame = 3
Query:  234 GRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX----AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGP--DFSESHQVLDWTF 770
            GR LY++PV  W       A   T F+  I         ADG+ F      S P +                     VE DT+ N  W  P   H+GID+     N  +S+ +    L +G+   V I YD  +KIL+  + Y  +     I   + + + +P  V VG + +TG   D +E+H V  W+F
Sbjct:   75 GRTLYAKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPAQGYGYLGIFNNSKQDNSYQTLGVEFDTFSNP-WDPPQVPHIGIDV-----NSIRSIKTQPFQLDNGQVANVVIKYDASSKILHAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSF 259          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LCS2_ROBPS (Seed agglutinin 2 OS=Robinia pseudoacacia PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.366e-12
Identity = 55/194 (28.35%), Postives = 85/194 (43.81%), Query Frame = 3
Query:  225 KKVGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX----AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPD--FSESHQVLDWTF 770
            K +GR LY+ P   W       A   T+F+  I   PN   +ADG+ F  A   + P +                    AVE DT+ N +W DP   HMGI++     N   S+ +   +  +G    V I Y+  TK L   + Y       +I   + + + +P  V  GF+A+TG D  + +++ VL W+F
Sbjct:   76 KSLGRALYAAPFQIWDSTTGNVASFVTSFSFIIQA-PNPATTADGLAFFLAPVDTQPLDLGGMLGIFKNGYFNKSNQIVAVEFDTFSNRHW-DPTGRHMGINV-----NSIVSVKTVPWNWANGEVANVFISYEASTKSLTASLVYPSLETSFIIHAIVDVKDVLPEWVRFGFSATTGIDTGYVQTNDVLSWSF 262          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LEC_BAUPU (Lectin OS=Bauhinia purpurea PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.561e-11
Identity = 64/228 (28.07%), Postives = 96/228 (42.11%), Query Frame = 3
Query:  135 LICMGAVTPSYGYLSLTSDPSPESPDQLPLKK-VGRVLYSQPVTAWPAM-------ISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX------AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTT 776
            +I +G  T + G L LT        D +PLK   G+  YS+PV  W +         S +F +R    P+ T  ADG  F  A   S   +                      AVE DT+ N  WSD    H+GI++ +  S      D+    +        HI YD  +KI+ V + Y  N     +   + L + +P  V +GF+  TG  F+E+  +L W+FT+
Sbjct:   52 IIFLGNATYTPGALRLTRI----GEDGIPLKSNAGQASYSRPVFLWDSTGHVASFYTSFSFIVRSIDVPHIT--ADGFAFFLAPVDSSVKDYGGCLGLFRYKTATDPSKNQVVAVEFDTWPNTEWSDLRYPHIGINVNSTVSVATTRWDNDDAYVTKS---TAHITYDATSKIITVLLTY-DNGRHYQLSHVVDLPKILPERVRIGFSGGTG--FNETQYILSWSFTS 267          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LECG_ARAHY (Galactose-binding lectin OS=Arachis hypogaea PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.561e-11
Identity = 57/195 (29.23%), Postives = 84/195 (43.08%), Query Frame = 3
Query:  222 LKKVGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFAT-DTSPPTEXXXXXXXXXXXXXXXX---AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTT 776
            +  VGRVLY+ PV  W       A   T+F+  +    +  D ADG+ F  A  DT  P                      VE DTY N  ++DP  +H+GID+     N   S+ +   +  SG  ++V + YD  TK L V V      +   I + + L   +P  V  GF+AS      + H +  W+FT+
Sbjct:   63 VNSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDY-DPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAGHFVGVEFDTYSNSEYNDPPTDHVGIDV-----NSVDSVKTVPWNSVSGAVVKVTVIYDSSTKTLSVAVTNDNGDI-TTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLIRSWSFTS 250          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LEC4_GRISI (Lectin-4 OS=Griffonia simplicifolia PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11
Identity = 60/220 (27.27%), Postives = 92/220 (41.82%), Query Frame = 3
Query:  144 MGAVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP-----AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX------AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDFSESHQVLDWTF 770
            +G  T   G L LT   +  +P +      G+  YS+PV  W      A   T+FT  +  Y   T  ADG+ F  A   S   +                      AVE DT+ N  W+DP   H+GID+ ++ S      ++   D         HI YD  +KIL V ++Y  +    ++   + L++ +P  V +GF+A  G  + E   +L W F
Sbjct:   25 LGDATRIPGALQLTKTDANGNPVR---SSAGQASYSEPVFLWDSTGKAASFYTSFTFLLKNYGAPT--ADGLAFFLAPVDSSVKDYGGFLGLFRHETAADPSKNQVVAVEFDTWINKDWNDPPYPHIGIDVNSIVSVATTRWEND--DAYGSSIATAHITYDARSKILTVLLSYE-HGRDYILSHVVDLAKVLPQKVRIGFSAGVG--YDEVTYILSWHF 234          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LCB1_ROBPS (Bark agglutinin I polypeptide A OS=Robinia pseudoacacia PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11
Identity = 54/194 (27.84%), Postives = 86/194 (44.33%), Query Frame = 3
Query:  225 KKVGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX----AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPD--FSESHQVLDWTF 770
            K +GR LY+ P   W       A   T+F+  I   PN T +ADG+ F  A   + P +                    AVE DT+ N ++ DP   HMGI++     N   S+ +   +  +G    V I Y+  TK L   + Y       ++   + + + +P  V  GF+A+TG D  + +++ VL W+F
Sbjct:   76 KSLGRALYAAPFQIWDSTTGNVASFVTSFSFIIQA-PNPTTTADGLAFFLAPVDTQPLDVGGMLGIFKDGYFNKSNQIVAVEFDTFSNIHF-DPKGRHMGINV-----NSIVSIKTVPWNWTNGEVANVFISYEASTKSLTASLVYPSLETSFIVHAIVDVKDVLPEWVRFGFSATTGIDKGYVQTNDVLSWSF 262          
The following BLAST results are available for this feature:
BLAST of CF835444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LEC_ERYCG4.854e-1329.69Lectin OS=Erythrina crista-galli PE=1 SV=1[more]
LEC_BOWMI6.339e-1331.25Lectin OS=Bowringia mildbraedii PE=1 SV=1[more]
LECR_CLALU6.339e-1329.74Lectin-related protein (Fragment) OS=Cladrastis lu... [more]
LEC_LENCU1.081e-1230.96Lectin OS=Lens culinaris PE=1 SV=2[more]
LEC_ERYCO4.109e-1227.75Lectin OS=Erythrina corallodendron PE=1 SV=3[more]
LCS2_ROBPS5.366e-1228.35Seed agglutinin 2 OS=Robinia pseudoacacia PE=1 SV=... [more]
LEC_BAUPU1.561e-1128.07Lectin OS=Bauhinia purpurea PE=1 SV=2[more]
LECG_ARAHY1.561e-1129.23Galactose-binding lectin OS=Arachis hypogaea PE=1 ... [more]
LEC4_GRISI2.663e-1127.27Lectin-4 OS=Griffonia simplicifolia PE=1 SV=3[more]
LCB1_ROBPS2.663e-1127.84Bark agglutinin I polypeptide A OS=Robinia pseudoa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835444 ID=CF835444; Name=CF835444; organism=Citrus sinensis; type=EST; length=784bp
TTCGTCCCCATAAAATGATTTTCCTACTACTCCTTTCAATTTTTCTTCCC
TGTGCTTCTTCATCAATCCCTGTGGATCCACCTGTTAGCTTCTCATTTTC
CTCATTCAACCCAAAAAGTTGTAGCGATGGCAGCCTAATTTGCATGGGCG
CAGTGACTCCAAGTTATGGCTACTTGAGCCTCACATCAGACCCTTCACCA
GAATCGCCAGATCAGCTGCCGCTAAAAAAGGTTGGACGGGTTTTATACAG
CCAGCCTGTGACTGCATGGCCAGCTATGATTAGTACCACCTTCACCATTA
GGATCTCACCCTACCCAAATACAACGGATTCTGCAGATGGCATGACGTTT
GTTTTTGCAACCGATACCAGCCCTCCAACTGAAAACTCCGCCGGCGGAAA
TCTTGGACTGAGTAACGGTGTTTCGCAATTAGCCGTGGAGCTGGACACTT
ACAAGAACGACTACTGGTCTGATCCAGATGCTAACCATATGGGCATTGAC
ATAGCAAACTTAACATCGAATCCAGCCAAGAGTCTCGACAGCTCTGGTAT
TGATCTCAAAAGTGGAAGACCGATCCAGGTTCACATTTATTACGATGGAT
GGACGAAAATACTCTATGTTTATGTGGCATATGCGGGGAACCCACTTCAG
AAGCTTATTGAAAGACCTATCCTCTTGTCAGAAACAATTCCAAGCTCAGT
CTATGTTGGCTTCACAGCATCCACAGGGCCCGACTTTTCAGAAAGCCATC
AGGTGCTTGATTGGACCTTCACAACGTTCCCATT
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