CF835444

Overview
NameCF835444
Unique NameCF835444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LEC_LOTTE (Anti-H(O) lectin OS=Lotus tetragonolobus PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11
Identity = 73/235 (31.06%), Postives = 98/235 (41.70%), Query Frame = 3
Query:  126 DGSLICMG-AVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWPAMISTT----------FTIRISPYPNTTDSADGMTFVFA-TDTSPP---TEXXXXXXXXXXXXXXXXAVELDTYKNDYWSDPDA---NHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTT 776
            DGSLI  G A   + G L++ +DP   +P     +  GR LY+ PV  W +               F IR   Y  T    DG+ F  A   T  P   T                 AVE D+Y N +  DP +   +H+GID+     N   SL +   +  SG   +  I YD  T IL V V  + N     I   I L   +P  V VGF+A+TG    E H +  W+FT+
Sbjct:   11 DGSLILQGDAKIWTDGRLAMPTDPLVNNPKTT--RSAGRALYATPVPIWDSATGNVASFVTSFNFLFVIRELKYTPT----DGLVFFLAPVGTEIPSGSTGGFLGIFDGSNGFNQFVAVEFDSYHNIW--DPKSLRSSHVGIDV-----NSIMSLKAVNWNRVSGSLEKATIIYDSQTNILSV-VMTSQNGQITTIYGTIDLKTVLPEKVSVGFSATTGNPEREKHDIYSWSFTS 231          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LEC_LATSP (Lectin OS=Lathyrus sphaericus PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11
Identity = 59/190 (31.05%), Postives = 83/190 (43.68%), Query Frame = 3
Query:  231 VGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFA-TDTSPPTE---XXXXXXXXXXXXXXXXAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDFSESHQVLDWTF 770
            VGR LYS P+  W       A  + +FT  I P  ++   ADG TF  A  DT P  +                   AVE DT+ N  W DPD  H+G+DI ++ S   +  +    D  S      +I Y   T  L V V Y  +     +   + L + +P  V VG +AST   +S +H+V  W+F
Sbjct:   51 VGRALYSAPIHIWDRKTGKVADFTASFTFYIRPNSDSQVVADGFTFFIAPVDTQPRGDGGLLGVFNREEYDPTIHTVAVEFDTFHNQPW-DPDYIHIGVDINSIKSRITRPWNPH-YDTYS----IAYIAYKAATNELDVTVTYPNSRDYATLREVVDLKQIVPEWVRVGLSASTATYYS-AHEVYSWSF 233          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LECS_SOPJA (Seed lectin OS=Sophora japonica PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11
Identity = 63/227 (27.75%), Postives = 97/227 (42.73%), Query Frame = 3
Query:  150 AVTPSYGYLSLTSDPSPESPDQLPL-KKVGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX---------AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSESHQVLDWTFTT 776
            A+  S G L LT+       + +P+    GR LY  PV  W       A  +T+F+  +   P  + SADG+ F  A    PP                           AV+ DT+ N +  DP+  H+GID+ ++ S    +        ++G    V I Y   T+ L V + Y  +    ++   + L   +P  V VGFTA+TG    + E+H VL W+FT+
Sbjct:   61 ALVSSKGELQLTT-----VENGVPIWNSTGRALYYAPVHIWDKSTGRVASFATSFSFVVKA-PVASKSADGIAFFLA----PPNNQIQGPGGGHLGLFHSSGYNSSYQIIAVDFDTHINAW--DPNTRHIGIDVNSINSTKTVTWG-----WQNGEVANVLISYQAATETLTVSLTYPSSQTSYILSAAVDLKSILPEWVRVGFTAATGLTTQYVETHDVLSWSFTS 270          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LCS1_ROBPS (Seed agglutinin 1 OS=Robinia pseudoacacia PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11
Identity = 60/219 (27.40%), Postives = 95/219 (43.38%), Query Frame = 3
Query:  150 AVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX----AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPD--FSESHQVLDWTF 770
            A+  S G L LT+  +   P     + +GR LY+ P   W       A   T+F+  I   PN   +ADG+ F  A   + P +                    AVE DT+ N ++ DP   HMGI++     N   S+ +   +  +G    V I Y+  TK L   + Y       +I   + + + +P  V  GF+A+TG D  + +++ VL W+F
Sbjct:   55 ALVTSTGVLQLTNVVNGVPPR----RSIGRALYAAPFQIWDNTTGNVASFVTSFSFIIQA-PNPATTADGLAFFLAPVDTQPGDLGGMLGIFKDGSYNKSNQIVAVEFDTFSNIHF-DPKGRHMGINV-----NSIVSVKTVPWNWTNGEVANVFISYEASTKSLNASLVYPSLETSFIIHAIVDVKDVLPEWVRFGFSATTGIDTGYVQTNDVLSWSF 262          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  432 AVELDTYKN-DYWSDPDANHMGIDIANLTSN---PAKSLDSSG------IDLKSGRPIQVHIYYDGWTKILYVYVAYAG---NPLQKLIERPI-LLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTT 776
            AVE DT +     +D   NH+G++  +LTS+   P    D+          L+SG PI+  + YDG T+ L + V  A     P++ LI RP+  LS+ +   +YVGFTA+TG D S +H V+ W+F++
Sbjct:  144 AVEFDTVQGFKDGADRTGNHIGLNFNSLTSDVQEPVVYYDNEDPNRKEDFPLQSGDPIRAILDYDGPTQTLNLTVYPANLKSRPVRPLISRPVPKLSQIVQEEMYVGFTAATGRDQSSAHYVMGWSFSS 272          
BLAST of CF835444 vs. ExPASy Swiss-Prot
Match: LEC1_LABAL (Lectin 1 OS=Laburnum alpinum PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 54/201 (26.87%), Postives = 82/201 (40.80%), Query Frame = 3
Query:  231 VGRVLYSQPVTAWP--------AMISTTFTIRISPYP---NTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX------AVELDTYKNDYWS--DPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTT 776
            + R LY+ P+ AW         A  +T+F+  +   P      D  DG+ F  A   S                          AVE DTY    ++  DPD  H+G+D+     N  KS+ +   D ++G    V I Y   TK L V ++Y  +    ++   + L   +P  V VGF+A  G     +H +L W FT+
Sbjct:   42 IKRALYAAPIHAWDDDSETGKVASFATSFSFVVKEPPIQSRKADGVDGLAFFLAPANSQIPSGSSAGMFGLFCSSDYNSSNQIIAVEFDTYFGKAYNPWDPDFKHIGVDV-----NSIKSIKTVKWDWRNGDVANVVITYRAPTKSLTVSLSYPSDQTSNIVTASVDLKAILPEWVSVGFSAGVGNAAKFNHDILSWYFTS 237          
The following BLAST results are available for this feature:
BLAST of CF835444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LEC_LOTTE3.478e-1131.06Anti-H(O) lectin OS=Lotus tetragonolobus PE=1 SV=2[more]
LEC_LATSP3.478e-1131.05Lectin OS=Lathyrus sphaericus PE=1 SV=1[more]
LECS_SOPJA3.478e-1127.75Seed lectin OS=Sophora japonica PE=2 SV=1[more]
LCS1_ROBPS3.478e-1127.40Seed agglutinin 1 OS=Robinia pseudoacacia PE=1 SV=... [more]
LRKA2_ARATH5.933e-1136.43Lectin-domain containing receptor kinase A4.2 OS=A... [more]
LEC1_LABAL5.933e-1126.87Lectin 1 OS=Laburnum alpinum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835444 ID=CF835444; Name=CF835444; organism=Citrus sinensis; type=EST; length=784bp
TTCGTCCCCATAAAATGATTTTCCTACTACTCCTTTCAATTTTTCTTCCC
TGTGCTTCTTCATCAATCCCTGTGGATCCACCTGTTAGCTTCTCATTTTC
CTCATTCAACCCAAAAAGTTGTAGCGATGGCAGCCTAATTTGCATGGGCG
CAGTGACTCCAAGTTATGGCTACTTGAGCCTCACATCAGACCCTTCACCA
GAATCGCCAGATCAGCTGCCGCTAAAAAAGGTTGGACGGGTTTTATACAG
CCAGCCTGTGACTGCATGGCCAGCTATGATTAGTACCACCTTCACCATTA
GGATCTCACCCTACCCAAATACAACGGATTCTGCAGATGGCATGACGTTT
GTTTTTGCAACCGATACCAGCCCTCCAACTGAAAACTCCGCCGGCGGAAA
TCTTGGACTGAGTAACGGTGTTTCGCAATTAGCCGTGGAGCTGGACACTT
ACAAGAACGACTACTGGTCTGATCCAGATGCTAACCATATGGGCATTGAC
ATAGCAAACTTAACATCGAATCCAGCCAAGAGTCTCGACAGCTCTGGTAT
TGATCTCAAAAGTGGAAGACCGATCCAGGTTCACATTTATTACGATGGAT
GGACGAAAATACTCTATGTTTATGTGGCATATGCGGGGAACCCACTTCAG
AAGCTTATTGAAAGACCTATCCTCTTGTCAGAAACAATTCCAAGCTCAGT
CTATGTTGGCTTCACAGCATCCACAGGGCCCGACTTTTCAGAAAGCCATC
AGGTGCTTGATTGGACCTTCACAACGTTCCCATT
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