CF835449

Overview
NameCF835449
Unique NameCF835449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1875 contig Csv1_Contig1875:105..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835449 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 73/203 (35.96%), Postives = 93/203 (45.81%), Query Frame = -3
Query:   73 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYK*GFCP 678
            AA F+I NNC  T+W A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y+  FCP
Sbjct:   20 AATFNIKNNCGSTIWPAGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CF835449 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 53/85 (62.35%), Postives = 60/85 (70.59%), Query Frame = -3
Query:  424 AAKFDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEY 678
            A KFDI N C  TVWAA +PGGG++LD+GQTWT+    GT +AR W RT C FDASGKG C+TGDC   L C   GA P TLAEY
Sbjct:   19 AVKFDIKNQCGYTVWAAGLPGGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          
BLAST of CF835449 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 74/203 (36.45%), Postives = 92/203 (45.32%), Query Frame = -3
Query:   73 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYK*GFCP 678
            AA F+I NNC  T+W A +P GGG  L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAEY +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y+  FCP
Sbjct:   20 AATFNIKNNCGFTIWPAGIPVGGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CF835449 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 74/203 (36.45%), Postives = 97/203 (47.78%), Query Frame = -3
Query:   73 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYK*GFCP 678
            AA F ITNNC  TVW AA+P GGG+QLD+GQTWT+    GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS           C+     +C +                                       CPD Y  P D    T +C T ++Y+  FCP
Sbjct:   21 AATFTITNNCGYTVWPAAIPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFN-GGSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFS-----------CSTGDALQCRD-------------------------------------SSCPDAYHQPDD--PKTHSCNTNSNYQITFCP 169          
BLAST of CF835449 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 73/203 (35.96%), Postives = 92/203 (45.32%), Query Frame = -3
Query:   73 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYK*GFCP 678
            AA F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y+  FCP
Sbjct:   21 AATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CF835449 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 76/203 (37.44%), Postives = 95/203 (46.80%), Query Frame = -3
Query:   73 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYK*GFCP 678
            AA F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +       LK                 C +SG              CPD Y +P D   +T  C   ++Y+  FCP
Sbjct:   21 AATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGV------ALK-----------------CRDSG--------------CPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CF835449 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 72/203 (35.47%), Postives = 92/203 (45.32%), Query Frame = -3
Query:   73 AAKFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYK*GFCP 678
            AA F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y+  FCP
Sbjct:   21 AATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
The following BLAST results are available for this feature:
BLAST of CF835449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1A_HORVU1.434e-2635.96Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
PRR3_JUNVI1.873e-2662.35Pathogenesis-related protein (Fragment) OS=Juniper... [more]
TLP_WHEAT2.446e-2636.45Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
RST4_AVESA3.195e-2636.45Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
RST1_AVESA6.662e-2435.96Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA1.484e-2337.44Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA1.484e-2335.47Thaumatin-like pathogenesis-related protein 2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835449 ID=CF835449; Name=CF835449; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTTGAGGCTATGTCGTATAGTTTTCTATTCCCTTTAAG
ACCCCTGAAAAAAAATGNTTCAGGGGCAGAACCCTCACTTGTAGTCTGTC
CCAGTCGGGCAAGTAAATGTGCTGGTAGCGTCATCCTTAGGGTAACTGTA
AACATCCGGGCACCTATCCTTGAAAAACTTGGAGAAACCTGTAGGTCCGC
AGTTGCCTGAATTGCAACAGTACTCGTCGGTCTTGAACACGGGGCACGGC
CCGTTACATCCTCCAGGAACCTTCAATTCATTCGGGCACTCGCCAAGAAT
GTTAGCAGTGCACTTGATCACGCGGTTGCATGAGGGAGAGACAGAGCTAA
ATTCCATGGGAACATTGAATCCGTCAATGTTGGACATGTCAATGAAATCC
ATGTCATTGAATTGCTTCAACGCGTACTCGGCCAAGGTGTTAGGTGCTGC
ACCGTAGCCTTGGCACTCGAGGAGTCCGTTACAGTCACCGGTCTCGCATT
TGCCTTTGCCGGAAGCATCAAACTGGCATTTGGTTCGAGCCCAAATGCGG
GCTGCTTTTGTGCCTGGCTCGGCGGTGATGGTCCATGTTTGACCCTTGTC
GAGTTGCCTGCCGCCTCCGGGCACAGCGGCGGCCCAAACGGTGTCGGGGC
AATTGTTTGTGATATCGAATTTGGCAGCATGAGTCAGGGTGATGGAAATG
A
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